View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_high_20 (Length: 409)
Name: NF20456_high_20
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 10094887 - 10095078
Alignment:
| Q |
14 |
gaagccatgtcttggttacattatattcctcccaaattcatagaaacatggaacaaattgaagcaagctttcctcccttaatattcccatgcacccaaag |
113 |
Q |
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| T |
10094887 |
gaagccatgtcttggttacattctattcctcccaaattcatagaaacatggaacaaattgaagcaagctttcctcccttaatattcccatgcacccaaag |
10094986 |
T |
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| Q |
114 |
tttctcaacggggaaatggaacaataagcttttcacaaaaagatggggagctgttatatgaagtatatatggaagtgcttcaagaaaatact |
205 |
Q |
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| T |
10094987 |
tttctcaacggggaaatggaacaataagcttttcacaaaaagatggggagctgttatatgaagtatatatggaagtgcttcaagaaaatact |
10095078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 10034521 - 10034714
Alignment:
| Q |
14 |
gaagccatgtcttggttacattatattcctcccaaattcatagaaacat--ggaacaaattgaagcaagctttcctcccttaatattcccatgcacccaa |
111 |
Q |
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| T |
10034521 |
gaagccatgtcttggttacattctattcctcccaaattcatagaaacatatggaacaaattgaagcaagctttcctcccttaatattcccatgcacccaa |
10034620 |
T |
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| Q |
112 |
agtttctcaacggggaaatggaacaataagcttttcacaaaaagatggggagctgttatatgaagtatatatggaagtgcttcaagaaaatact |
205 |
Q |
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| T |
10034621 |
agtttctcaacggggaaatggaacaataagcttttcacaaaaagatggggagctgttatatgaagtatatatggaagtgcttcaagaaaatact |
10034714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 205 - 402
Target Start/End: Original strand, 10095104 - 10095295
Alignment:
| Q |
205 |
tagaaggggataatcatccctgccttatgcaaaggattgattcaccccacgaagaagacgctagatattttcacaggatcaggtatcttgatgaacaaaa |
304 |
Q |
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| T |
10095104 |
tagaaggggataatcatccctgccttatgcaaaggattgattcaccccacgaagaagacgctagatattttcaccgg---aggtatcttgatgaacaaaa |
10095200 |
T |
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| Q |
305 |
gctttgaagaggtcttcttgatcatcctttgaataaaagctttctatccttga-tgaatagttacttcaccattagactttgatacccccagtaattgc |
402 |
Q |
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| T |
10095201 |
gctttgaagaggtcttct---tcatcctttgaataaaagctttctatccttgaccttatagttacttcaccattagactttgata-ccccagtaattgc |
10095295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 205 - 402
Target Start/End: Original strand, 10034740 - 10034926
Alignment:
| Q |
205 |
tagaaggggataatcatccctgccttatgcaaaggattgattcaccccacgaagaagacgctagatattttcacaggatcaggtatcttgatgaacaaaa |
304 |
Q |
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| T |
10034740 |
tagaaggggataatcatccctgccttatgcaaaggattgattcaccccacgaagaagacgctagatattttcaccgg---aggtatcttgatgaacaaaa |
10034836 |
T |
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| Q |
305 |
gctttgaagaggtcttcttgatcatcctttgaataaaagctttctatccttgatgaatagttacttcaccattagactttgatacccccagtaattgc |
402 |
Q |
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| T |
10034837 |
gctttgaagaggtcttct---tcatcctttgaataaaagctttctatactt----tatagttacttcaccattagactttgata-ccccagtaattgc |
10034926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 23667478 - 23667393
Alignment:
| Q |
69 |
aattgaagcaagctttcctcccttaatattcccatgcacccaaagtttctcaacggggaaatggaacaataagcttttcacaaaaa |
154 |
Q |
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| T |
23667478 |
aattgaagcaatctttcctccctcaatattcccatgcatccaaagtttctcattcggggaatgaaacaataagtttttcacaaaaa |
23667393 |
T |
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