View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20456_high_21 (Length: 407)

Name: NF20456_high_21
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20456_high_21
NF20456_high_21
[»] chr1 (2 HSPs)
chr1 (16-222)||(2954410-2954616)
chr1 (305-407)||(2954699-2954803)
[»] chr3 (3 HSPs)
chr3 (16-217)||(9105706-9105908)
chr3 (16-222)||(22247187-22247395)
chr3 (16-90)||(25987865-25987939)
[»] chr4 (1 HSPs)
chr4 (16-214)||(17520681-17520880)
[»] chr2 (3 HSPs)
chr2 (16-222)||(26677754-26677961)
chr2 (83-214)||(9733189-9733321)
chr2 (143-204)||(44194030-44194092)
[»] chr8 (2 HSPs)
chr8 (61-218)||(9474557-9474716)
chr8 (78-222)||(9307950-9308096)
[»] chr7 (3 HSPs)
chr7 (145-204)||(18343491-18343551)
chr7 (145-204)||(18344409-18344469)
chr7 (147-198)||(47959753-47959805)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 2954410 - 2954616
Alignment:
Q  16 atgtgcttagtgttcgagatgttatggttagtgattgtttccattatttgaaaagaaagaagtaggcgtattttccaacataaggagaagcacattcttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2954410 atgtgcttagtgttcgagatgttatggttagtgattgtttccattatttgaaaagaaagaagtaggcgtattttccaacataaggagaagcatattcttt 2954509  T
Q  116 ccatgggcgaacaggtgaagcttcttatgttttggtggtttaaatcgaaattgctttattcgattttgactacaatttttggaggcaaactcttatgttc 215  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2954510 ccatgggcgatcaggtgaagcttcttatgttttggtggtttaaatcgaaattgctttattcgattttgactacaatttttggaggcaaactcttatgttc 2954609  T
Q  216 tgcctaa 222  Q
    |||||||    
T  2954610 tgcctaa 2954616  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 305 - 407
Target Start/End: Original strand, 2954699 - 2954803
Alignment:
Q  305 ttccttagcacgccttgtgctgcctgacctttttgtggtggtaatatatcatttttgctcttc--nnnnnnnnnnctgtaaataaaagtatttatagatc 402  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||            |||||||||||||||||||||||||    
T  2954699 ttccttagcacgtcttgtgctgcctgacctttttgtggtggtaatatatcattttagctcttcaaaaaaaaaaaactgtaaataaaagtatttatagatc 2954798  T
Q  403 actca 407  Q
    |||||    
T  2954799 actca 2954803  T

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Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 9105706 - 9105908
Alignment:
Q  16 atgtgcttagtgttcgagatgttatggttagtgattgtttccattatttgaaaagaaagaagtaggcgtattttccaacataaggagaagcacattcttt 115  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||| ||||| ||||| |||| || |||||||||||||||||||||| |||| ||||| |    
T  9105706 atgtgcttagtgttcaagatgttgtggttagtgtttgtttccatcatttggaaagagagaaataagcgtattttccaacataaggaggagcatattctct 9105805  T
Q  116 ccatgggcgaacaggtgaagcttcttatgttttggtggtttaaatcgaaatt-gctttattcgattttgactacaatttttggaggcaaactcttatgtt 214  Q
    ||||||||||||| || ||| ||||| |||||| |||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||| || ||||||    
T  9105806 ccatgggcgaacaagttaagtttcttgtgtttttgtggtttaaatcaaaattagctttattcaattttgactagaatttttggaggcaaaatcctatgtt 9105905  T
Q  215 ctg 217  Q
    |||    
T  9105906 ctg 9105908  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 22247395 - 22247187
Alignment:
Q  16 atgtgcttagtgttcgagatgttatggttagtgattgtttccattatttgaaaagaaagaagtaggcgtattttccaacataaggagaagcaca-ttctt 114  Q
    ||||||||| ||||| |||||||| |||||| | |||||||||||||||||||||| |||| |||| ||| ||||||||||||| || |||| | || ||    
T  22247395 atgtgcttactgttcaagatgttacggttagcggttgtttccattatttgaaaagagagaaataggtgtactttccaacataagaaggagcatatttttt 22247296  T
Q  115 tccatgggcgaacaggtgaagcttcttatgttttggtggtttaaatcgaa-attgctttattcgattttgactacaatttttggaggcaaactcttatgt 213  Q
    |||||| | || || || ||| ||||| ||||||||||||||||||||||  ||| |||||||||||||||||||||||| | ||||||||  | |||||    
T  22247295 tccatgtgtgagcaagttaagtttcttgtgttttggtggtttaaatcgaagtttgttttattcgattttgactacaatttcttgaggcaaaagcctatgt 22247196  T
Q  214 tctgcctaa 222  Q
    | |||||||    
T  22247195 tttgcctaa 22247187  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 25987865 - 25987939
Alignment:
Q  16 atgtgcttagtgttcgagatgttatggttagtgattgtttccattatttgaaaagaaagaagtaggcgtattttc 90  Q
    ||||||||| ||||| |||||||||||||||   |||||| ||||||||| | ||| |||| |||||| ||||||    
T  25987865 atgtgcttaatgttcaagatgttatggttagcagttgttttcattatttgcatagagagaaataggcgaattttc 25987939  T

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Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 17520880 - 17520681
Alignment:
Q  16 atgtgcttagtgttcgagatgttatggttagtgattgtttccattatttgaaaagaaagaagtaggcgtattttccaacataaggagaagcacattcttt 115  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||  || ||||| |||| || || ||||||||||||||||||| |||| ||| |||    
T  17520880 atgtgcttagtgttcaagatgttatggttagtggttgtttccattacctggaaagagagaaataagcctattttccaacataaggaggagcatatttttt 17520781  T
Q  116 ccatgggcgaacaggtgaagcttcttatgttttggtggtttaaatcgaaat-tgctttattcgattttgactacaatttttggaggcaaactcttatgtt 214  Q
    |||||  || |||||| ||| ||||  |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| |||||||||    
T  17520780 ccatgtacggacaggttaagattctagtgttttggtggtttaaatcgaagtctgttttattcgattttgactacaatttttggaggcaaaatcttatgtt 17520681  T

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Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 26677754 - 26677961
Alignment:
Q  16 atgtgcttagtgttcgagatgttatggttagtgattgtttccattatttgaaaagaaagaagtaggcgtattttccaacataaggagaagcacattcttt 115  Q
    ||||||||||||||| || |||||||||||| | || ||||||||||||  ||||| |||| ||  ||||||||||||||||||||  |||| |||||||    
T  26677754 atgtgcttagtgttcaaggtgttatggttagcggttctttccattatttagaaagagagaaataaacgtattttccaacataaggaagagcatattcttt 26677853  T
Q  116 ccatgggcgaacaggtgaagcttcttatgttttggtggtttaaatcgaaa-ttgctttattcgattttgactacaatttttggaggcaaactcttatgtt 214  Q
     |||| ||||||| || ||||||||| |||||  |||||||||||| ||| || |||||||| |||||||||||||| |||||||||||| |  ||||||    
T  26677854 tcatgagcgaacatgttaagcttcttgtgtttatgtggtttaaatcaaaattttctttattcaattttgactacaatatttggaggcaaaattctatgtt 26677953  T
Q  215 ctgcctaa 222  Q
    ||||||||    
T  26677954 ctgcctaa 26677961  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 9733189 - 9733321
Alignment:
Q  83 gtattttccaacataaggagaagcacattctttccatgggcgaacaggtgaagcttcttatgttttggtggtttaaatcgaaa-ttgctttattcgattt 181  Q
    |||||||||||||||||||| |  | |||||||| |  || ||||| || ||||||||| ||||||||||||||||||| ||| ||  |||||| |||||    
T  9733189 gtattttccaacataaggaggaatatattctttcaaatggtgaacatgttaagcttcttgtgttttggtggtttaaatcaaaatttattttatttgattt 9733288  T
Q  182 tgactacaatttttggaggcaaactcttatgtt 214  Q
    |||||| ||||||| |||||||| || ||||||    
T  9733289 tgactataatttttagaggcaaaatcctatgtt 9733321  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 44194030 - 44194092
Alignment:
Q  143 tgttttggtggtttaaatcgaaa-ttgctttattcgattttgactacaatttttggaggcaaa 204  Q
    ||||||||||||||||||| ||| ||| || ||| |||||| |||||||| ||||||||||||    
T  44194030 tgttttggtggtttaaatccaaaattgtttcatttgattttcactacaatatttggaggcaaa 44194092  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 9474716 - 9474557
Alignment:
Q  61 atttgaaaagaaagaagtaggcgtattttccaacataaggagaagcacattctttccatgggcgaacagg-tgaagcttcttatgttttggtggtttaaa 159  Q
    ||||| ||||| |||| ||||| ||||||||||||||| ||| | || |||||||||||||| |  |||| | ||||||||| |||||| ||||||||||    
T  9474716 atttggaaagagagaaataggcttattttccaacataatgaggaacatattctttccatgggagttcagggttaagcttcttgtgtttttgtggtttaaa 9474617  T
Q  160 tcgaaatt-gctttattcgattttgactacaatttttggaggcaaactcttatgttctgc 218  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||| || ||||||||||    
T  9474616 tcgaaatttgttttattcaattttgactacaatttttggaggcaaaatcctatgttctgc 9474557  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 9307950 - 9308096
Alignment:
Q  78 taggcgtattttccaacataaggagaagcacattctttccatggg-cgaacaggtgaagcttcttatgttttggtggtttaaatcgaaatt-gctttatt 175  Q
    |||| ||||||| ||| |||||| | | || |||||||||||||  | |||| || ||||||||| ||||||  ||||||||||||||||| | ||||||    
T  9307950 taggtgtatttttcaatataaggcggaccatattctttccatggaacaaacacgttaagcttcttgtgttttactggtttaaatcgaaatttgttttatt 9308049  T
Q  176 cgattttgactacaatttttggaggcaaactcttatgttctgcctaa 222  Q
    |||| ||||||||||||| | || ||||| || |||||| |||||||    
T  9308050 cgatattgactacaatttgttgaagcaaaatcatatgttatgcctaa 9308096  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 18343491 - 18343551
Alignment:
Q  145 ttttggtggtttaaatcgaa-attgctttattcgattttgactacaatttttggaggcaaa 204  Q
    ||||||||||||||||||||  ||| || |||||||||| |||| ||| ||||||||||||    
T  18343491 ttttggtggtttaaatcgaagtttgtttcattcgattttcactataatgtttggaggcaaa 18343551  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 18344409 - 18344469
Alignment:
Q  145 ttttggtggtttaaatcgaa-attgctttattcgattttgactacaatttttggaggcaaa 204  Q
    ||||||||||||||||||||  ||| || |||||||||| |||||||| |||| |||||||    
T  18344409 ttttggtggtttaaatcgaagtttgtttcattcgattttcactacaatgtttgaaggcaaa 18344469  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 47959805 - 47959753
Alignment:
Q  147 ttggtggtttaaatcgaaat-tgctttattcgattttgactacaatttttgga 198  Q
    |||||||||||||| ||||| |||||||||| |||| ||||| ||||||||||    
T  47959805 ttggtggtttaaattgaaatatgctttattcaatttcgactataatttttgga 47959753  T

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