View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_high_25 (Length: 366)
Name: NF20456_high_25
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 90 - 353
Target Start/End: Original strand, 39080643 - 39080906
Alignment:
| Q |
90 |
ctaaagcaatgtataaacatttaaatcctcccaataattataaagaaagcaacctgtttcaatctggttatgctttattttcagtgagggaacctgtttg |
189 |
Q |
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| T |
39080643 |
ctaaagcaatttataaacatttaagtcctcccaataattataaagaaagcaacctgtttcaatttggttatgctttattttcagtgagggaacctgtttg |
39080742 |
T |
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| Q |
190 |
tttgttaggtctttatgtattaggttcctaataagctctaaatatatattatatccttgtatatagttgtatcactgatcatcatcaattttaatataat |
289 |
Q |
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| T |
39080743 |
tttgttaggtctttatgtattatgttcctaataagctctaaatatatattatatccttgtatatagttgtatcactgatcattatcaattttaatataat |
39080842 |
T |
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| Q |
290 |
ttttcttgagttctaccctcaattctcaatctctttaaatgatttcatcccatttcacatctct |
353 |
Q |
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| T |
39080843 |
ttttcttgagttctaccctcaattctcaatctctttaaatgatttcatcccatttcacatctct |
39080906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 251 - 353
Target Start/End: Original strand, 39090169 - 39090269
Alignment:
| Q |
251 |
tatagttgtatcactgatcatcatcaattttaatataatttttcttgagttctaccctcaattctcaatctctttaaatgatttcatcccatttcacatc |
350 |
Q |
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||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||| || |
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| T |
39090169 |
tatagttgtatcact--tcatcatcaatttcaatatactttttcttgagttccaccctcaactctcaatctctttaaatgatttcctaccatttcacctc |
39090266 |
T |
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| Q |
351 |
tct |
353 |
Q |
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||| |
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| T |
39090267 |
tct |
39090269 |
T |
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