View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_high_26 (Length: 365)
Name: NF20456_high_26
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_high_26 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Complemental strand, 19807807 - 19807457
Alignment:
| Q |
15 |
atgaacaatcgcagtgataatttaacaccaaaacctttcaaaaatactataacacaaataagtcatggagaaaattgtgctaacactaacaagttgattc |
114 |
Q |
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| T |
19807807 |
atgaacaatcgcagtgataatttaacaccaaaacctttcaaaaatactataacacaaataagtcatggagaaaattgtgctaacactaacaagctgattc |
19807708 |
T |
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| Q |
115 |
aattacgcattagcagcaattgaagagtcaaaagatctgaacacagcgacctagaatgatttgcaatcacccttgcagtcacatgaaatgcaaataagcg |
214 |
Q |
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| T |
19807707 |
aattacgcattagcagcaattgaagagtcaaaagatctgaacacagcgacctagaatgatttgcaatcacccttgcagtcacatgaaatgcaaataagtg |
19807608 |
T |
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| Q |
215 |
aaaagtcaagtgacacaatcgatcaagcatttaatgtcataaatgcgggatttgtgcaaagcaaggtagaccgcaactaaagaggtaatacctctttgaa |
314 |
Q |
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| T |
19807607 |
aaaagtcaagtgacacaatcgatcaagcatttaatgtcataaatgcgggatttgtgcaaagcaaggtagaccgcaactaaagaggtaataactctttgaa |
19807508 |
T |
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| Q |
315 |
aataaatccaacattcaatgtcacaaatgcaacaagaatggaccaaatata |
365 |
Q |
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| T |
19807507 |
aataaatccaacattcaatgtcacaaatgcaacaagaatggaccaaatata |
19807457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 258
Target Start/End: Original strand, 19968690 - 19968873
Alignment:
| Q |
74 |
aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaagatctgaacacagcgacctagaatga |
173 |
Q |
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| T |
19968690 |
aagtcatggagaaagttatgcgcacacaaacaagttgattcaattacgccgtagcagcaattcaagagtaaaaatatctaaacacaataagcataaatga |
19968789 |
T |
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| Q |
174 |
tttgcaatcacccttgcagtcacatgaaatgcaaataagcgaaaagtcaagtgacacaatcgatcaagcatttaatgtcataaat |
258 |
Q |
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| T |
19968790 |
tttgcaagcatccttggattcctatgaaatgcaaatgagtgaagggtcaagtgaca-aaccaatcaagcatttaatgtcataaat |
19968873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 1347021 - 1347192
Alignment:
| Q |
74 |
aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaa-gatctgaacacagcgacctagaatg |
172 |
Q |
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| T |
1347021 |
aagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatg |
1347120 |
T |
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| Q |
173 |
atttgcaatcacccttgcagtcacatgaaatgcaaataagcgaaa-agtcaagtgacacaatcgatcaagca |
243 |
Q |
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| T |
1347121 |
atttgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagca |
1347192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 346
Target Start/End: Original strand, 19653262 - 19653355
Alignment:
| Q |
254 |
taaatgcgggatttgtgcaaagcaaggtagaccgcaactaaagaggtaatacctc-tttgaaaataaatccaacattcaatgtcacaaatgcaa |
346 |
Q |
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| T |
19653262 |
taaatgagtgatttgtgcaacggaatgtagaccgcaaccaaagaggcaatggatctttttaaaacaaatccaatattcaatgtcacagatgcaa |
19653355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 40031413 - 40031335
Alignment:
| Q |
74 |
aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaagatct |
152 |
Q |
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| T |
40031413 |
aagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcatctcaagagtcaaaagatct |
40031335 |
T |
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