View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_high_35 (Length: 253)
Name: NF20456_high_35
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 32524489 - 32524607
Alignment:
| Q |
1 |
atttatccgaaatcacatttatgtgtcttttgaccattttatgacatatctattgatctaaaattgatactttgattatctattttttgcaggtttcaat |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32524489 |
atttatccaaaatcacatttatgtgtcttttgaccattttatgacatatctattgatctaaaattgataatttgattatctattttttgcaggtttcaat |
32524588 |
T |
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| Q |
101 |
ggtttttcggtagccaaat |
119 |
Q |
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||||||||||||||||||| |
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| T |
32524589 |
ggtttttcggtagccaaat |
32524607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 45832058 - 45832116
Alignment:
| Q |
1 |
atttatccgaaatcacatttatgtgtcttttgaccattttatgacatatctattgatct |
59 |
Q |
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|||||| | |||||||| || ||||||||||||| ||| |||||||||||||||||||| |
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| T |
45832058 |
atttatgcaaaatcacagttttgtgtcttttgacaattctatgacatatctattgatct |
45832116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 43604139 - 43604017
Alignment:
| Q |
1 |
atttatccgaaatcacatttatgtgtcttttgaccattttatgacatatctattgatctaaaattgatactttgattatctattttttgcaggtttcaat |
100 |
Q |
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|||||| | |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |
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| T |
43604139 |
atttatgcaaaatcaaatctctgtgtcttttgaccattttatgacatatctattgatctaaaattgatactttgattatctat-ttttgcagatttcagt |
43604041 |
T |
|
| Q |
101 |
ggtttttcggtagccaaattcaat |
124 |
Q |
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||||||| ||||||||||||||| |
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| T |
43604040 |
ggttttttagtagccaaattcaat |
43604017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 39072416 - 39072316
Alignment:
| Q |
133 |
tgataactttatttgctgatgtgtttgtccaggtcaagttcagtatgtagcataagttattggttgtttgtgcatcattcagaatcaattttctaaggta |
232 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| | |||||| |||||||||||||||| ||||||||| |
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| T |
39072416 |
tgataactttagttgctgatgtgtttgtccaggtcaagttcagtatgcagcaaaagttattggctctttgtgtgtcattcagaatcaattatctaaggta |
39072317 |
T |
|
| Q |
233 |
c |
233 |
Q |
| |
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| |
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|
| T |
39072316 |
c |
39072316 |
T |
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