View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_high_41 (Length: 241)
Name: NF20456_high_41
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 40494701 - 40494923
Alignment:
| Q |
7 |
atgcaagagtaagaaatatgataagaaaggtgtatccatccataattaaattaaatgttaagaaaccttaacatccaaggtaataaacatagttcactat |
106 |
Q |
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| T |
40494701 |
atgcaagagtgagaaatatgataagaaaggtgtatcc----ataattaaattaaatgttaagaaaccttaacatccaaggtaataaacatagttcactat |
40494796 |
T |
|
| Q |
107 |
atgtcacgtgtaactgtggtcatgtacaaccaaacgaaaac-aagtaaaaagtaaacacagtaaagtattgatgaaacaaatcacaagnnnnnnnaatta |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40494797 |
atgtcacgtgtaactgtggtcatgtacaaccaaacgaaaacaaagtaaaaagtaaacacagtaaagtattgatgaaacaaatcacaagttttt----tta |
40494892 |
T |
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| Q |
206 |
attattatatatcttaatatcaagattaggtgt |
238 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
40494893 |
atta--atatatcttaatatcaagattaggtgt |
40494923 |
T |
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