View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_high_46 (Length: 223)
Name: NF20456_high_46
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_high_46 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 42144598 - 42144809
Alignment:
| Q |
1 |
aacatatctataaggttcatctcttttaaaccagtattgttgttgatctttcttggatgttacttcttgtaagaaatcagcaacaccttttctctctgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42144598 |
aacatatctataaggttcatctcttttaaaccagtattgttgttgatctttcttggatgttacttcttgtaagaaatcagcaacaccttttctctctgga |
42144697 |
T |
|
| Q |
101 |
cacctaaagcctgtgtattcgaagaactctagcacattttcacgcggaccttgatatactatttgaccttctgaaagaagaataatgtcgtcaaagaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42144698 |
cacctaaagcctgtgtattcgaagaactctagcacattttcacgcggaccttgatatactatttgaccttctgaaagaagaataatgtcgtcaaagaggt |
42144797 |
T |
|
| Q |
201 |
caaatgtctctg |
212 |
Q |
| |
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|||||||||||| |
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| T |
42144798 |
caaatgtctctg |
42144809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 42175717 - 42175928
Alignment:
| Q |
1 |
aacatatctataaggttcatctcttttaaaccagtattgttgttgatctttcttggatgttacttcttgtaagaaatcagcaacaccttttctctctgga |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42175717 |
aacatatctataaggttcatctcttctaaaccagtattgttgttggtctttcttggatgttacttcttgtaagaaatcagcaacacattttctctctggg |
42175816 |
T |
|
| Q |
101 |
cacctaaagcctgtgtattcgaagaactctagcacattttcacgcggaccttgatatactatttgaccttctgaaagaagaataatgtcgtcaaagaggt |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || | |
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| T |
42175817 |
cacctaaagcccgtgtattcgaagaactctagcacattttcacgcggaccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaaaagtt |
42175916 |
T |
|
| Q |
201 |
caaatgtctctg |
212 |
Q |
| |
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|||||||||||| |
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| T |
42175917 |
caaatgtctctg |
42175928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 42156545 - 42156756
Alignment:
| Q |
1 |
aacatatctataaggttcatctcttttaaaccagtattgttgttgatctttcttggatgttacttcttgtaagaaatcagcaacaccttttctctctgga |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
42156545 |
aacatatctataaggttcatctattttaaaccagtattgttgttgatctttcttggatgttacttcttgtaagaaatcagcaatcccttttctctcagga |
42156644 |
T |
|
| Q |
101 |
cacctaaagcctgtgtattcgaagaactctagcacattttcacgcggaccttgatatactatttgaccttctgaaagaagaataatgtcgtcaaagaggt |
200 |
Q |
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|
|||||||| ||||||||||| ||||||||||| || || ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||| | |
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| T |
42156645 |
cacctaaaacctgtgtattcaaagaactctagtacgttctcacgtggtccttgatatacaatttgaccttctgaaagtagaataatgtcgtcaaagagtt |
42156744 |
T |
|
| Q |
201 |
caaatgtctctg |
212 |
Q |
| |
|
|||||||||||| |
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|
| T |
42156745 |
caaatgtctctg |
42156756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 42135465 - 42135676
Alignment:
| Q |
1 |
aacatatctataaggttcatctcttttaaaccagtattgttgttgatctttcttggatgttacttcttgtaagaaatcagcaacaccttttctctctgga |
100 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||| || |||||||| ||| |
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| T |
42135465 |
aacatatttataaggtttatctcttctaaaccaatattgttgttggtcttttttggatgttacttcttgtaaaaaatcagctactccttttcttggagga |
42135564 |
T |
|
| Q |
101 |
cacctaaagcctgtgtattcgaagaactctagcacattttcacgcggaccttgatatactatttgaccttctgaaagaagaataatgtcgtcaaagaggt |
200 |
Q |
| |
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|| | || || || ||| || |||| || ||||||||| || || ||||| ||||| ||||||||||||||||| || |||||||| |||||||| | |
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| T |
42135565 |
catttgaaaccgatggtttcaaaaaactgtaacacattttcgcgtggtccttggtatacaatttgaccttctgaaagtaggataatgtcatcaaagagtt |
42135664 |
T |
|
| Q |
201 |
caaatgtctctg |
212 |
Q |
| |
|
|||||||||||| |
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|
| T |
42135665 |
caaatgtctctg |
42135676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 34144416 - 34144516
Alignment:
| Q |
88 |
ttttctctctggacacctaaagcctgtgtattcgaagaactctagcacattttcacgcggaccttgatatactatttgaccttctgaaagaagaataatg |
187 |
Q |
| |
|
||||||||| ||||| ||||| ||| ||||||| ||||||| |||||||||||| | |||||||| |||| |||||| ||||| |||| || |||||| |
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| T |
34144416 |
ttttctctcgggacatctaaaacctatgtattcaaagaactgaagcacattttcatgtggaccttggaatacaatttgagcttct-aaagtaggataatg |
34144514 |
T |
|
| Q |
188 |
tc |
189 |
Q |
| |
|
|| |
|
|
| T |
34144515 |
tc |
34144516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 2151409 - 2151485
Alignment:
| Q |
61 |
tacttcttgtaagaaatcagcaacaccttttctctctggacacctaaagcctgtgtattcgaagaactctagcacat |
137 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || |||||| | || ||||| |||| || |||||||| |||| |
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| T |
2151409 |
tacttcttgtaagaaatcagcaacgccttttctttcgggacacttgaaacctgtcgattcaaaaaactctagtacat |
2151485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 2163683 - 2163725
Alignment:
| Q |
61 |
tacttcttgtaagaaatcagcaacaccttttctctctggacac |
103 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || |||||| |
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| T |
2163683 |
tacttcttgtaagaaatcagcaactccttttctttcaggacac |
2163725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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