View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_high_49 (Length: 212)
Name: NF20456_high_49
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_high_49 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 14611709 - 14611920
Alignment:
| Q |
1 |
tgctaagatgggccacaggttctgttgagattttcttctccaagaacaatgcattcctcgccagtaagcgcctaaaacttttacagcgtcttgcatacct |
100 |
Q |
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| T |
14611709 |
tgctaagatgggccacaggttctgttgagattttcttctccaagaacaatgcattcctcgccagtaagcgcctaaaacttttacagcgtcttgcatacct |
14611808 |
T |
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| Q |
101 |
caatgttggaatctaccccttcacctccctcttcctcattgtgtattgctttctcccggcactctcattgttcactggatattttattgtgcaaaccctc |
200 |
Q |
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| T |
14611809 |
caatgttggaatctaccccttcacctccctcttcctcattgtgtattgctttctcccggcactctcattgttcactggatattttattgtgcaaaccctc |
14611908 |
T |
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| Q |
201 |
agtgttgccttt |
212 |
Q |
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|||||||||||| |
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| T |
14611909 |
agtgttgccttt |
14611920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 14596861 - 14596650
Alignment:
| Q |
1 |
tgctaagatgggccacaggttctgttgagattttcttctccaagaacaatgcattcctcgccagtaagcgcctaaaacttttacagcgtcttgcatacct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| |
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| T |
14596861 |
tgctaagatgggccacaggttctgttgagattttcttctccaagaacaatgcattcctcgctagtaagcgcctaaaacttttacaacgtctcgcttacct |
14596762 |
T |
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| Q |
101 |
caatgttggaatctaccccttcacctccctcttcctcattgtgtattgctttctcccggcactctcattgttcactggatattttattgtgcaaaccctc |
200 |
Q |
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| T |
14596761 |
caatgttggtgtctaccccttcacctccatcctcctcattgtgtattgcttcctcccagcactctcattgttttccggatattttattgtgcaaacccta |
14596662 |
T |
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| Q |
201 |
agtgttgccttt |
212 |
Q |
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| T |
14596661 |
agtatcgccttt |
14596650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 15417076 - 15416952
Alignment:
| Q |
3 |
ctaagatgggccacaggttctgttgagattttcttctccaagaacaatgcattcctcgccagtaagcgcctaaaacttttacagcgtcttgcatacctca |
102 |
Q |
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||||||||||| |||||||| || || ||||||||||| || ||||| || | |||| |||| ||||| ||| | ||||| | |||||||||||| |
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| T |
15417076 |
ctaagatgggcaacaggttcagtagaaattttcttctcaaaaaacaacgcgattttcgcaagtagacgccttaaattcttacaaagaattgcatacctca |
15416977 |
T |
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| Q |
103 |
atgttggaatctaccccttcacctc |
127 |
Q |
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|||| ||||||||||| |||||||| |
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| T |
15416976 |
atgtcggaatctaccctttcacctc |
15416952 |
T |
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