View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_high_5 (Length: 714)
Name: NF20456_high_5
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_high_5 |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 546; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 16 - 698
Target Start/End: Complemental strand, 38364131 - 38363442
Alignment:
| Q |
16 |
atgagatgccactaaaagggtcttttgatatgatttataccaaagttataggannnnnnnatggctaaaaggaatagaagttgctcaaacgtgcatcaag |
115 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||| ||| |
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| T |
38364131 |
atgaaatgccactaaaagggtcttttgatatgatatataccaaagttataagatttttttatagctaaaaggaatagaagttgctcaaacgtgcattaag |
38364032 |
T |
|
| Q |
116 |
gcatcgtggtcagtggtcatatactttaattcgtgtcaattatattaacaaatatggccatcgccagtgtgtacaattccaaatattgtggatatgtccc |
215 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||||| ||||||||||||| | |
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| T |
38364031 |
gcatcgtggtcactggtcatatactttaattcgtgtcaattgtagtaacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcac |
38363932 |
T |
|
| Q |
216 |
t------cgaaatcacgtgcaatgccacttttgaaatatccttttattt-tatttatctatcatatgctatatccagagtgttatcctcatataatggtg |
308 |
Q |
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| T |
38363931 |
ttgaaatcgaaatcacgtgcaatgccacttttgaaatatccttttatatatctatatctatcatatgctatatccagagtgttatcctcatataatggtg |
38363832 |
T |
|
| Q |
309 |
cctattggtaatcaatattcctcttggtgttccttttcctgaatcttgtgaactcaaaaccatgtgatatatgggacctctataatgaaaattatattca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38363831 |
cctattggtaatcaatattcctcttggtgttccttttcctgaatcttgtgaactcaaaaccatgtgatatatgggacctctataatgaaaattatattca |
38363732 |
T |
|
| Q |
409 |
attcctcatttctcccatacaatatataatcgaagttaatataaactttttaatactgtcaactaatcatattgtattaattttaaattaggtgtcatga |
508 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38363731 |
attcctcatttctcccatacaacatataatcgaagttaatataaactttttaatactatcaactaatcatattgtattaattttaaattaggtgtcatga |
38363632 |
T |
|
| Q |
509 |
aagtcaaacatttataatgatcaaatccatattgagactgaattaattggatattttggtgtttggcatgcaggctgggtctagtgagtggctgcaaatg |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
38363631 |
aagtcaaacatttataatgatcaaatccatattgagactgaattaattggatattttggtgtttggcatgcaggctggatctagtgagtggctacaaatg |
38363532 |
T |
|
| Q |
609 |
aatcatttatggggtgcaaattggaacattgttacaggacctttgagaggacctttctctgtgaaattaagcacgtcaacggggaaaagc |
698 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38363531 |
aatcatctatggggtgcaaattggaacattgttacaggacctttgagaggacctttctctgtgaaattaagcacgtcaacgggaaaaagc |
38363442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 11 - 436
Target Start/End: Complemental strand, 38370603 - 38370175
Alignment:
| Q |
11 |
agaatatgagatgccactaaaagggtcttttgatatgatttataccaaagttataggannnnnnnatggctaaaaggaatagaagttgctcaaacgtgca |
110 |
Q |
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|||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38370603 |
agaaaatgagatgccattaaaagggtcttttgatatgatatataccaaagttataggatttttttatggctaaaaggaatagaagttgctcaaacgtgca |
38370504 |
T |
|
| Q |
111 |
tcaaggcatcgtggtcagtggtcatatactttaattcgtgtcaattatattaacaaatatggccatcgccagtgtgtacaattccaaatattgtggatat |
210 |
Q |
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| T |
38370503 |
ctaaggcatcgtggtcactggtcatatactttaattcgtgtcaattgtagtaacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatat |
38370404 |
T |
|
| Q |
211 |
gtccc------tcgaaatcacgtgcaatgccacttttgaaatatccttttattttatttatctatcatatgctatatccagagtgttatcctcatataat |
304 |
Q |
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||| | ||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||| |
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| T |
38370403 |
gtcacttgaaatcgaaatcacgtgcaatgccacttttgaaatatcctttt-ttctatct-------atatgctatatccagagtgttatcctcatataac |
38370312 |
T |
|
| Q |
305 |
ggtgcctattggtaatcaatattcctcttg-------gtgttccttttcctgaatcttgtgaactcaaaaccatgtgatatatgggacctctataatgaa |
397 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
38370311 |
ggtgcctattggtaatcaatattgctcttggtcgtgtgtgttccttttcctgaatcttgtgaactcaaaaccatgtgatatatgggacctc--taacaat |
38370214 |
T |
|
| Q |
398 |
aattatattcaattcctcatttctcccatacaatatata |
436 |
Q |
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|||||||||||||||||||||||||| |||| |||||| |
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| T |
38370213 |
aattatattcaattcctcatttctccattacattatata |
38370175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 554 - 698
Target Start/End: Complemental strand, 38369945 - 38369801
Alignment:
| Q |
554 |
attggatattttggtgtttggcatgcaggctgggtctagtgagtggctgcaaatgaatcatttatggggtgcaaattggaacattgttacaggacctttg |
653 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38369945 |
attggatattttggtgtttggtatgcaggctgggtctagtgagtggctgcaaatgaatcatttatggggtgcaaattggaacattgttacaggacctttg |
38369846 |
T |
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| Q |
654 |
agaggacctttctctgtgaaattaagcacgtcaacggggaaaagc |
698 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
38369845 |
agaggacctttctctgtgaaattaagcacatcaacgggaaaaagc |
38369801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 588 - 670
Target Start/End: Complemental strand, 6666 - 6584
Alignment:
| Q |
588 |
tctagtgagtggctgcaaatgaatcatttatggggtgcaaattggaacattgttacaggacctttgagaggacctttctctgt |
670 |
Q |
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|||||||||||||| |||||||||||| | ||||||||||||||| |||| || |||||||| || ||||| |||||||| |
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| T |
6666 |
tctagtgagtggctacaaatgaatcatctgtggggtgcaaattggtgcattattgggggacctttaaggggaccattctctgt |
6584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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