View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_11 (Length: 540)
Name: NF20456_low_11
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 80 - 529
Target Start/End: Complemental strand, 5927041 - 5926592
Alignment:
| Q |
80 |
atgaatcaaatctataaccatttatttaaggagtatctattatttttaagatgtgcttagggtatatgaattccttaccactcggataaacaacatgtat |
179 |
Q |
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| T |
5927041 |
atgaatcaaatctataaccatttatttaaggtgtatctattatttttaagatgtgcttagggtatatgaattccttacgactcggataaacaacatgtat |
5926942 |
T |
|
| Q |
180 |
ccacatcgccttcataaacattattaatatgtttagatttataatgagaaagtattaattaacagttggtacactattacatatgtcaaatctgatattc |
279 |
Q |
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| T |
5926941 |
ccacatcgccttcataaacattattaatatgtttagatttataatgagaaagtattaattaacagttggtacacaattacatatgtcaaatgtgatattc |
5926842 |
T |
|
| Q |
280 |
atattgttaactgaacacaaataaattgtaaaatgtaactaacgtttatgtgatattaagatgtgtaatgtagtaaccattgttattagatcaaagtgaa |
379 |
Q |
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| T |
5926841 |
atattgttaactgaacacaaataaattgtaaaatgtaactaacgtttatgtgatattaagatgtgtaatgtagtaaccattgttattagatcaaagtgaa |
5926742 |
T |
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| Q |
380 |
tattaaaattgaaacataaagttaaaggactttttcaaagtgatcattggatcataactttcgatttataaaagtgagaggagtaaacttttgctttaca |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5926741 |
tattaaaattgaaacataaagttaaaggactttttcaaagtgatcattggatcataactttcgatttataaaagtgagaggagtaaacttttgctttaca |
5926642 |
T |
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| Q |
480 |
accgatcaaaaataaaatttctaatgaaaaatatttaaaatgttcttcat |
529 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5926641 |
actgaccaaaaataaaatttctaatgaaaaatatttaaaatgttcttcat |
5926592 |
T |
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