View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_12 (Length: 514)
Name: NF20456_low_12
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 19805133 - 19805617
Alignment:
| Q |
18 |
cacacacaacatcatcgcctaatcagtagatttcttttgttatctgaagaatccattcattcaatcaatggataacgaaataagtaataagaggaggaaa |
117 |
Q |
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| T |
19805133 |
cacacacaacatcatcgcctaatcagtagatttcttttgttatctgaagaatccattcattcaatcaatggaaaacgaaataagtaataagaggaggaaa |
19805232 |
T |
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| Q |
118 |
ataatgcctccttcacagtcacaatcggcgacgacgatggtagtgagtatcaacaacttccctgacgagatactaactcacatactctcctttcttccgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19805233 |
ataatgcctccttcacagtcacaatcggcgacgacgatggtagtgagtatcaacaacttccctgacgagatactaactcacatactctcctttcttccgt |
19805332 |
T |
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| Q |
218 |
tcaaacaagctttcaaaaccagtgttctttccaagaggtggcgcccgttatgctactcactccccgatcttcacatcaccgttattagaagggtgcacaa |
317 |
Q |
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| T |
19805333 |
tcaaacaagctttcaaaaccagtgttctttccaagaggtggcgcccgttatgctactcactccccgatcttcacatcaccgttattagaagggtgcacaa |
19805432 |
T |
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| Q |
318 |
cttccgtcgattcatggatgctgttatgttctccccacactctcacaacctaactctcaactctttttatctcacgatcataagttgttctaaattcttg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19805433 |
cttccgtcgattcatggatgctgttatgttctccccacactctcacaacctaactctcaactctttttatctcacgatcataagttgttctaaattcttg |
19805532 |
T |
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| Q |
418 |
gagactgaggctgactgcttcgacaaatgggtcgaagcagcaaaacaacgtcatgtcaaggatctccagctacactttttacctt |
502 |
Q |
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| T |
19805533 |
gagactgaggctgactgcttcgacaaatgggtcgaagcagcaaaacaacgtcgtgtcaaggatctccagctacactttttacctt |
19805617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 20110844 - 20110916
Alignment:
| Q |
166 |
atcaacaacttccctgacgagatactaactcacatactctcctttcttccgttcaaacaagctttcaaaacca |
238 |
Q |
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|||||| ||||||| ||||| |||||||||||||| |||| |||||||| |||||| | ||||||||||||| |
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| T |
20110844 |
atcaacgacttcccagacgatatactaactcacatcgtctcttttcttccattcaaagacgctttcaaaacca |
20110916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 281
Target Start/End: Complemental strand, 19970664 - 19970549
Alignment:
| Q |
166 |
atcaacaacttccctgacgagatactaactcacatactctcctttcttccgttcaaacaagctttcaaaaccagtgttctttccaagaggtggcgcccgt |
265 |
Q |
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|||||| ||||||| ||||| |||||||||||||| ||||| |||||||| ||| | | ||||||| ||||| || |||||||||| |||| | | | |
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| T |
19970664 |
atcaacgacttcccagacgatatactaactcacattctctcttttcttccaatcagagacgctttcagaaccaccgtgctttccaagacgtgggtctcat |
19970565 |
T |
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| Q |
266 |
tatgctactcactccc |
281 |
Q |
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| T |
19970564 |
tgtgctactcactccc |
19970549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 17382801 - 17382881
Alignment:
| Q |
167 |
tcaacaacttccctgacgagatactaactcacatactctcctttcttccgttcaaacaagctttcaaaaccagtgttctttc |
248 |
Q |
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||||||||||||| || || |||||||||||||| ||||| |||||||| | |||||| ||||| | ||||| ||||||||| |
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| T |
17382801 |
tcaacaacttccccgatgatatactaactcacattctctcttttcttccatgcaaacacgcttttagaacca-tgttctttc |
17382881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 391
Target Start/End: Complemental strand, 13713198 - 13713126
Alignment:
| Q |
319 |
ttccgtcgattcatggatgctgttatgttctccccacactctcacaacctaactctcaactctttttatctca |
391 |
Q |
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||||||| ||| ||||| ||||||||||||||| || |||||||| ||||||| || || |||||| |||||| |
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| T |
13713198 |
ttccgtcaatttatggacgctgttatgttctccacatactctcaccacctaaccctaaaatcttttcatctca |
13713126 |
T |
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