View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20456_low_14 (Length: 501)

Name: NF20456_low_14
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20456_low_14
NF20456_low_14
[»] chr2 (15 HSPs)
chr2 (23-485)||(1869711-1870173)
chr2 (300-365)||(29430699-29430765)
chr2 (287-350)||(14666506-14666571)
chr2 (313-365)||(40837502-40837555)
chr2 (259-365)||(5133715-5133823)
chr2 (286-364)||(17952747-17952827)
chr2 (316-401)||(31096210-31096294)
chr2 (287-356)||(7936978-7937044)
chr2 (258-365)||(28933767-28933876)
chr2 (286-357)||(34054947-34055020)
chr2 (287-365)||(10143115-10143195)
chr2 (279-358)||(13736332-13736412)
chr2 (317-356)||(32615370-32615410)
chr2 (286-355)||(35099645-35099717)
chr2 (337-365)||(39567846-39567874)
[»] chr5 (7 HSPs)
chr5 (258-357)||(28586784-28586885)
chr5 (258-357)||(14295457-14295558)
chr5 (219-365)||(18704016-18704162)
chr5 (258-365)||(16889678-16889787)
chr5 (313-365)||(35135736-35135789)
chr5 (279-357)||(36542321-36542401)
chr5 (313-360)||(38728322-38728370)
[»] chr6 (10 HSPs)
chr6 (287-365)||(33500528-33500608)
chr6 (255-363)||(4006659-4006769)
chr6 (209-364)||(281817-281974)
chr6 (287-365)||(1401053-1401132)
chr6 (299-365)||(4247694-4247761)
chr6 (297-362)||(5328920-5328986)
chr6 (303-363)||(24782004-24782066)
chr6 (313-365)||(10452434-10452487)
chr6 (317-365)||(33068639-33068688)
chr6 (287-357)||(7354155-7354227)
[»] chr3 (14 HSPs)
chr3 (258-364)||(24887301-24887409)
chr3 (258-364)||(38462225-38462333)
chr3 (287-367)||(52618944-52619026)
chr3 (258-364)||(36646400-36646508)
chr3 (286-365)||(40122799-40122879)
chr3 (298-365)||(402600-402668)
chr3 (298-401)||(20192664-20192765)
chr3 (313-364)||(49586990-49587042)
chr3 (288-365)||(24235731-24235810)
chr3 (286-335)||(41452497-41452547)
chr3 (297-362)||(54775074-54775140)
chr3 (313-365)||(2321118-2321170)
chr3 (287-365)||(22232769-22232849)
chr3 (258-364)||(28306102-28306210)
[»] chr7 (8 HSPs)
chr7 (281-365)||(5369732-5369816)
chr7 (287-357)||(27492746-27492818)
chr7 (313-365)||(33894566-33894618)
chr7 (289-365)||(5006558-5006636)
chr7 (313-366)||(39551622-39551676)
chr7 (287-357)||(1373587-1373659)
chr7 (303-365)||(35536050-35536114)
chr7 (313-364)||(39591541-39591593)
[»] chr4 (9 HSPs)
chr4 (297-364)||(43824228-43824296)
chr4 (286-357)||(10192235-10192308)
chr4 (258-354)||(30207589-30207686)
chr4 (287-357)||(54325084-54325156)
chr4 (291-355)||(53626729-53626795)
chr4 (286-365)||(3175894-3175975)
chr4 (315-365)||(4191682-4191734)
chr4 (286-365)||(46415838-46415919)
chr4 (286-333)||(20907323-20907371)
[»] chr1 (14 HSPs)
chr1 (275-365)||(40304090-40304181)
chr1 (289-365)||(49517013-49517091)
chr1 (256-365)||(5756702-5756813)
chr1 (286-363)||(33527193-33527272)
chr1 (296-365)||(5160352-5160420)
chr1 (287-366)||(4276683-4276764)
chr1 (313-365)||(6074417-6074470)
chr1 (313-357)||(15360845-15360890)
chr1 (313-365)||(23895279-23895332)
chr1 (313-365)||(45999362-45999415)
chr1 (337-365)||(6976891-6976919)
chr1 (313-365)||(24146334-24146386)
chr1 (296-362)||(29007772-29007840)
chr1 (337-365)||(29046012-29046040)
[»] chr8 (6 HSPs)
chr8 (258-365)||(11188173-11188282)
chr8 (279-365)||(10075590-10075678)
chr8 (258-310)||(30277263-30277315)
chr8 (279-365)||(4558741-4558829)
chr8 (255-311)||(8060668-8060724)
chr8 (258-364)||(31862437-31862545)


Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 23 - 485
Target Start/End: Complemental strand, 1870173 - 1869711
Alignment:
Q  23 tgatgtttgtactaccaggaagtttgtattacaaaactccaaaccaacctagatgagtgaattgatggactgtagatgcacaagcatttccatatgcaag 122  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1870173 tgatgtttgtactaccaggatgtttgtattacaaaactccaaaccaacctagatgagtgaattgatggactgtaggtgcacaagcatttccatatgcaag 1870074  T
Q  123 cctttgtgcgtgcataatgacataaattatggggcaaactttgattggtttagttgagcttatccattggtataaacactacagaaactgtttgtaagag 222  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1870073 cctttgtgcgtgcataatgacatatattatggggcaaactttgattggtttagttgagcttatccattggtataaacactactgaaactgtttgtaagag 1869974  T
Q  223 cttattgaaacaacttattacaggtcttaagattattttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataactatatgaaaa 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1869973 cttattgaaacaacttattacaggtcttaagattattttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataactagatgaaaa 1869874  T
Q  323 cagtttgattttaattatcttttgttatagaaatatcttatactagcataagaacttaattaaactgtgtatccaaacaaagcctacacatatgtgtttt 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  1869873 cagtttgattttaattatcttttgttatagaaatatcttatactagcataagaacttaattaaactgtgtatccaaacaaagcctacgcacatgtgtttt 1869774  T
Q  423 ctaatggcatgaagagaactaaccttcataaataaggggtttatcaacttgtgaaacaattct 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1869773 ctaatggcatgaagagaactaaccttcataaataaggggtttatcaacttgtgaaacaattct 1869711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 29430765 - 29430699
Alignment:
Q  300 aacagcttataact-atatgaaaacagtttgattttaattatcttttgttatagaaatatcttatac 365  Q
    ||||||||||| || ||| ||||||||||||| |||| ||| ||||||||||||||||| |||||||    
T  29430765 aacagcttatagcttataagaaaacagtttgactttatttaacttttgttatagaaatagcttatac 29430699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 14666571 - 14666506
Alignment:
Q  287 gatagcttgtgaaaacagcttataac-tatatgaaaacagtttgatttta-attatcttttgttat 350  Q
    ||||||||||||||||| |||||||| ||||||||| |||||||| ||||  ||||||||||||||    
T  14666571 gatagcttgtgaaaacaacttataacttatatgaaatcagtttgactttattttatcttttgttat 14666506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 40837502 - 40837555
Alignment:
Q  313 tatatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatac 365  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||    
T  40837502 tatatgaaaacaatttgactttaatttatcttttgttatagaaatagcttatac 40837555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 365
Target Start/End: Complemental strand, 5133823 - 5133715
Alignment:
Q  259 tttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaat 356  Q
    |||||||||||| |  ||| ||||||  |||| ||| ||||||||||||||| || |||| ||||||||||   |||| || ||||||||||||||||||    
T  5133823 tttcagcttatttccataagctctcttagataacttttgaaaacagcttatatcttatataaaaacagtttatctttattttatcttttgttatagaaat 5133724  T
Q  357 atcttatac 365  Q
    | |||||||    
T  5133723 agcttatac 5133715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 17952747 - 17952827
Alignment:
Q  286 ggatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttata 364  Q
    ||||||||| |||||||| ||| || || ||||||||| ||||||| |||| || ||||||||||||||||||| ||||||    
T  17952747 ggatagcttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttata 17952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 401
Target Start/End: Complemental strand, 31096294 - 31096210
Alignment:
Q  316 atgaaaacagtttgattttaa--ttatcttttgttatagaaatatcttatactagcataagaacttaattaaactgtgtatccaaaca 401  Q
    ||||||||||||||| |||||  ||||| ||||||||| ||| |  |||| ||   ||||| ||||||||||||||||||||||||||    
T  31096294 atgaaaacagtttgactttaattttatcatttgttataaaaacaatttatgct---ataagcacttaattaaactgtgtatccaaaca 31096210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 7937044 - 7936978
Alignment:
Q  287 gatagcttgtgaaaacagcttataa-ctatatgaaaacagtttgattttaattatcttttgttatagaaat 356  Q
    |||||||| |||||||||||||||| ||||||||||||| |||  ||    ||||||||||||||||||||    
T  7937044 gatagcttatgaaaacagcttataatctatatgaaaacaattttctt----ttatcttttgttatagaaat 7936978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 365
Target Start/End: Complemental strand, 28933876 - 28933767
Alignment:
Q  258 ttttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaa 355  Q
    |||||| |||||| || | | |||||| ||||||||| ||||||||  |||||||| | ||||||| | |||||||| | || ||||||||||||| |||    
T  28933876 ttttcaacttatttctatcagctctctaggatagcttatgaaaacaatttataacttaaatgaaaataatttgatttgattttatcttttgttatataaa 28933777  T
Q  356 tatcttatac 365  Q
    || |||||||    
T  28933776 tagcttatac 28933767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 34054947 - 34055020
Alignment:
Q  286 ggatagcttgtgaaaacagcttataac-tatatgaaaacagtttgattttaatt-atcttttgttatagaaata 357  Q
    ||||||||| |||||||| |||||| | |||||| ||||||||||  |||| || |||||||||||||||||||    
T  34054947 ggatagcttatgaaaacaccttatatcatatatgtaaacagtttgcctttattttatcttttgttatagaaata 34055020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 10143195 - 10143115
Alignment:
Q  287 gatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatac 365  Q
    |||||||| |||||| | |||||| || |||| |||||||||||| || | || ||||||||||||||||||| |||||||    
T  10143195 gatagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttatac 10143115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 358
Target Start/End: Original strand, 13736332 - 13736412
Alignment:
Q  279 ctctctgggatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaattatcttttgttatagaaatat 358  Q
    |||||| | ||||||| ||||||||||||||| || || |||||| ||||||| || | ||||||||||| ||| ||||||    
T  13736332 ctctctagtatagcttatgaaaacagcttatagctgatgtgaaaatagtttgacttcatttatcttttgtaataaaaatat 13736412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 356
Target Start/End: Original strand, 32615370 - 32615410
Alignment:
Q  317 tgaaaacagtttgattttaatt-atcttttgttatagaaat 356  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  32615370 tgaaaacagtttgattttagtttatcttttgttatagaaat 32615410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 35099645 - 35099717
Alignment:
Q  286 ggatagcttgtgaaaacagcttataactat-atgaaaacag-tttgatttta-attatcttttgttatagaaa 355  Q
    ||||||||| ||||| |||||||||||| | ||||||| || ||||||||||  |||||||||||||||||||    
T  35099645 ggatagcttatgaaagcagcttataactttaatgaaaatagttttgattttattttatcttttgttatagaaa 35099717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 365
Target Start/End: Complemental strand, 39567874 - 39567846
Alignment:
Q  337 ttatcttttgttatagaaatatcttatac 365  Q
    |||||||||||||||||||||||||||||    
T  39567874 ttatcttttgttatagaaatatcttatac 39567846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 258 - 357
Target Start/End: Original strand, 28586784 - 28586885
Alignment:
Q  258 ttttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataa-ctatatgaaaacagtttgatttta-attatcttttgttatagaaa 355  Q
    ||||||||||||| |  ||| |||||| |||||||| || ||||||||||||||  |||||||||||||||||| ||||  |||||||||||||||||||    
T  28586784 ttttcagcttatttcgataagctctctaggatagctcgtcaaaacagcttataatttatatgaaaacagtttgactttattttatcttttgttatagaaa 28586883  T
Q  356 ta 357  Q
    ||    
T  28586884 ta 28586885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 14295558 - 14295457
Alignment:
Q  258 ttttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataac-tatatgaaaacagtttgatttta-attatcttttgttatagaaa 355  Q
    ||||||||||| | ||  || |||||  |||||||||  |||||||||||||| | |||||||||||||||||| ||||  |||||||||||||||||||    
T  14295558 ttttcagcttacttctaaaagctctccaggatagcttacgaaaacagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaa 14295459  T
Q  356 ta 357  Q
    ||    
T  14295458 ta 14295457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 365
Target Start/End: Original strand, 18704016 - 18704162
Alignment:
Q  219 agagcttattgaaacaacttattacaggtct-taagattattttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataact-ata 316  Q
    ||||||||| |||||||||||| ||| |||| |||| || ||||||||||||| |  |||  ||| ||  ||||||| |||||||| |||||| || |||    
T  18704016 agagcttat-gaaacaacttataacatgtctataag-ttgttttcagcttatttccataagatctttgtaatagcttatgaaaacaacttatagcttata 18704113  T
Q  317 tgaaaacagtttgattttaattatcttttgttatagaaatatcttatac 365  Q
    | |||| || |||| |||| ||||||||||||||||||||| |||||||    
T  18704114 taaaaatagcttgactttatttatcttttgttatagaaataacttatac 18704162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 365
Target Start/End: Complemental strand, 16889787 - 16889678
Alignment:
Q  258 ttttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataac-tatatgaaaacagtttgatttta-attatcttttgttatagaaa 355  Q
    ||||||| ||||| |  |||||||||| | ||||||| ||||||||||||||| | | ||| |||||||||||| || |  |||||||||||||| ||||    
T  16889787 ttttcagattatttccataaactctctagcatagcttatgaaaacagcttatagcttctataaaaacagtttgacttaagtttatcttttgttatggaaa 16889688  T
Q  356 tatcttatac 365  Q
    || |||||||    
T  16889687 tagcttatac 16889678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 35135736 - 35135789
Alignment:
Q  313 tatatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatac 365  Q
    |||||||||| ||||||| |||| || |||||||||||||||||||||||||||    
T  35135736 tatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatac 35135789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 36542321 - 36542401
Alignment:
Q  279 ctctctgggatagcttgtgaaaacagcttataact-atatgaaaacagtttgatttta-attatcttttgttatagaaata 357  Q
    |||||| ||||||||| || || ||||||||| || |||||| ||||||||||||| | | |||| |||||||||||||||    
T  36542321 ctctctaggatagcttatggaatcagcttatagcttatatgagaacagtttgatttgataatatcgtttgttatagaaata 36542401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 38728370 - 38728322
Alignment:
Q  313 tatatgaaaacagtttgatttta-attatcttttgttatagaaatatct 360  Q
    |||| |||||||||||||||||| | |||||||||||||||||| ||||    
T  38728370 tataggaaaacagtttgattttataatatcttttgttatagaaaaatct 38728322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 365
Target Start/End: Original strand, 33500528 - 33500608
Alignment:
Q  287 gatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatac 365  Q
    ||||||||| | ||||||||||||||| ||||  |||||||||||||||| || ||||||||||||||||||| |||||||    
T  33500528 gatagcttgcggaaacagcttataacttatattgaaacagtttgattttactttatcttttgttatagaaatagcttatac 33500608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 363
Target Start/End: Complemental strand, 4006769 - 4006659
Alignment:
Q  255 ttattttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaatt-atcttttgttatag 352  Q
    ||||||||||||||||    ||| ||||| |||||||||| |||||||| |||||| || |||| |||||| ||||| |||| || ||| ||||||||||    
T  4006769 ttattttcagcttattttcataacctctcagggatagcttatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatag 4006670  T
Q  353 aaatatcttat 363  Q
    |||||||||||    
T  4006669 aaatatcttat 4006659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 364
Target Start/End: Original strand, 281817 - 281974
Alignment:
Q  209 actgtttgtaagagcttattgaaacaacttattacaggtct-taagattattttcagcttattcctgtaaactctctgggatagcttgtgaaaacagctt 307  Q
    ||||||||  |||||| || ||| |||||||| ||| |||| |||| || ||||||||||||| |  | | |||||| ||||||||| |||| |||||||    
T  281817 actgtttgggagagctaatggaagcaacttatgacatgtctataag-ttgttttcagcttatttccatgagctctctaggatagcttatgaacacagctt 281915  T
Q  308 ataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttata 364  Q
    ||| || |||||||||||  |||| |||| || |||||||||||||| |||| ||||||    
T  281916 atagcttatatgaaaacaagttgactttattttatcttttgttataggaatagcttata 281974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 1401132 - 1401053
Alignment:
Q  287 gatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaattatcttttgttatagaaatatcttatac 365  Q
    |||||||| ||||||||||||||| || |||  ||| ||||||||||||| ||||||||||| |||| | || |||||||    
T  1401132 gatagcttatgaaaacagcttatagcttatactaaagcagtttgattttatttatcttttgtcatagtagtaacttatac 1401053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 4247694 - 4247761
Alignment:
Q  299 aaacagcttataactat-atgaaaacagtttgattttaattatcttttgttatagaaatatcttatac 365  Q
    ||||||||||| ||| | |||| |||||||||| |||  ||||||||||||||||||||| |||||||    
T  4247694 aaacagcttattacttttatgacaacagtttgaatttttttatcttttgttatagaaatagcttatac 4247761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 5328986 - 5328920
Alignment:
Q  297 gaaaacagcttataactatatgaaaacagtttgattttaatt-atcttttgttatagaaatatctta 362  Q
    ||||||||||||||| ||||| ||||  |||||| |||| || ||||||||||||||||||| ||||    
T  5328986 gaaaacagcttataattatataaaaatggtttgactttattttatcttttgttatagaaataactta 5328920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 24782066 - 24782004
Alignment:
Q  303 agcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttat 363  Q
    ||||||||||| ||||||||||| |||||||| | || ||||||||||||||||||| |||||    
T  24782066 agcttataacttatatgaaaacaatttgatttgattttatcttttgttatagaaatagcttat 24782004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 10452434 - 10452487
Alignment:
Q  313 tatatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatac 365  Q
    |||||||||| |||||||||||| || || |||||||||||||||| |||||||    
T  10452434 tatatgaaaatagtttgattttattttatattttgttatagaaatagcttatac 10452487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 33068639 - 33068688
Alignment:
Q  317 tgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatac 365  Q
    ||||||||||||||| ||| || ||||||||||||||||||| |||||||    
T  33068639 tgaaaacagtttgatattattttatcttttgttatagaaataacttatac 33068688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 7354227 - 7354155
Alignment:
Q  287 gatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaata 357  Q
    ||||| || |||||||||||| || || ||||||||| |||| ||||||| || |||||||||||||||||||    
T  7354227 gatagtttatgaaaacagcttgtatcttatatgaaaatagttcgattttattttatcttttgttatagaaata 7354155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 258 - 364
Target Start/End: Original strand, 24887301 - 24887409
Alignment:
Q  258 ttttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataac-tatatgaaaacagtttgatttta-attatcttttgttatagaaa 355  Q
    |||||||||||||||  ||| |||||  ||||||||| |||||||||||| || | |||||||| ||||||||| ||||  |||||| ||||||||||||    
T  24887301 ttttcagcttattcccataagctctccaggatagcttatgaaaacagcttttagcttatatgaatacagtttgactttattttatctattgttatagaaa 24887400  T
Q  356 tatcttata 364  Q
    || ||||||    
T  24887401 tagcttata 24887409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 258 - 364
Target Start/End: Complemental strand, 38462333 - 38462225
Alignment:
Q  258 ttttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataac-tatatgaaaacagtttgatttta-attatcttttgttatagaaa 355  Q
    ||||||||||||| |  ||| || ||| ||||||||| ||||||||| ||||| | |||||||||||||||||| ||||  |||||||||| ||||||||    
T  38462333 ttttcagcttatttccataagctatcttggatagcttatgaaaacagtttatagcatatatgaaaacagtttgactttattttatcttttggtatagaaa 38462234  T
Q  356 tatcttata 364  Q
    || ||||||    
T  38462233 tagcttata 38462225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 287 - 367
Target Start/End: Complemental strand, 52619026 - 52618944
Alignment:
Q  287 gatagcttgtgaaaacagcttataac-tatatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatacta 367  Q
    |||||||||||||||||||||||||| |||||||||||| ||| | |||| || ||| |||||| |||||||| |||||||||    
T  52619026 gatagcttgtgaaaacagcttataacttatatgaaaacaatttaactttatttaatcatttgttttagaaatagcttatacta 52618944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 364
Target Start/End: Original strand, 36646400 - 36646508
Alignment:
Q  258 ttttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaa 355  Q
    |||||| |||||| || |||||||||| ||||||||| ||||||||  |||||||| ||||||||||| ||  | |||| || ||||||||| |||||||    
T  36646400 ttttcatcttatttctataaactctctaggatagcttatgaaaacaagttataacttatatgaaaacaattatactttattttatcttttgtcatagaaa 36646499  T
Q  356 tatcttata 364  Q
    || ||||||    
T  36646500 tagcttata 36646508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 365
Target Start/End: Original strand, 40122799 - 40122879
Alignment:
Q  286 ggatagcttgtgaaaacagcttataactatatgaaaacagtttgatttta-attatcttttgttatagaaatatcttatac 365  Q
    ||||||||| | |||||| |||||| || |||||||||||||||| ||||  |||||||||||||| |||||| |||||||    
T  40122799 ggatagcttataaaaacaacttatagctttatgaaaacagtttgactttattttatcttttgttattgaaatagcttatac 40122879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 402600 - 402668
Alignment:
Q  298 aaaacagcttataact-atatgaaaacagtttgattttaattatcttttgttatagaaatatcttatac 365  Q
    |||||||||||||||| ||| ||||||| ||| | ||||||||||||||  |||||||||| |||||||    
T  402600 aaaacagcttataacttatacgaaaacaatttaaatttaattatctttttctatagaaatagcttatac 402668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 401
Target Start/End: Original strand, 20192664 - 20192765
Alignment:
Q  298 aaaacagcttata-actatatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatactagcataagaacttaattaaactgtgtatc 395  Q
    ||||||||||||| | ||||||||||| |||||| |||| || ||||||||||||| ||||| ||||||    |||||| |||||||| | |||| ||||    
T  20192664 aaaacagcttatagattatatgaaaactgtttgactttattttatcttttgttatataaatagcttata----cataagcacttaattgagctgtttatc 20192759  T
Q  396 caaaca 401  Q
    ||||||    
T  20192760 caaaca 20192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 49586990 - 49587042
Alignment:
Q  313 tatatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttata 364  Q
    |||||||||||||||||| |||| || ||||||||||||||||||| ||||||    
T  49586990 tatatgaaaacagtttgactttattttatcttttgttatagaaatagcttata 49587042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 365
Target Start/End: Original strand, 24235731 - 24235810
Alignment:
Q  288 atagcttgtgaaaacagcttataact-atatgaaaacagtttgatttta-attatcttttgttatagaaatatcttatac 365  Q
    ||||||| |||||||| |||||| || ||||  ||| ||||||| |||| |||||||||||||||||||||| |||||||    
T  24235731 atagcttatgaaaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaaataacttatac 24235810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 41452547 - 41452497
Alignment:
Q  286 ggatagcttgtgaaaacagcttataact-atatgaaaacagtttgatttta 335  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||||| ||||    
T  41452547 ggatagcttatgaaaacagcttacaactaatatgaaaacagtttgacttta 41452497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 54775140 - 54775074
Alignment:
Q  297 gaaaacagcttataactatatgaaaacagtttgattttaatt-atcttttgttatagaaatatctta 362  Q
    ||||||||||||||| ||||| ||||  |||||| |||| || ||||||||||||||||||| ||||    
T  54775140 gaaaacagcttataattatataaaaatggtttgactttattttatcttttgttatagaaataactta 54775074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 2321170 - 2321118
Alignment:
Q  313 tatatgaaaacagtttgattttaattatcttttgttatagaaatatcttatac 365  Q
    |||||||||| ||||||| |||| |||||||||||||| ||| || |||||||    
T  2321170 tatatgaaaatagtttgactttatttatcttttgttattgaattagcttatac 2321118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 22232849 - 22232769
Alignment:
Q  287 gatagcttgtgaaaacagcttataact-atatgaaaacagtttgatttta-attatcttttgttatagaaatatcttatac 365  Q
    |||||||| |||||| ||||||  ||| ||||||||||||||||| ||||  ||||| ||||||||| ||||| |||||||    
T  22232849 gatagcttatgaaaatagcttacgacttatatgaaaacagtttgactttattttatcatttgttatataaatagcttatac 22232769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 364
Target Start/End: Complemental strand, 28306210 - 28306102
Alignment:
Q  258 ttttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataact-atatgaaaacagtttgatttta-attatcttttgttatagaaa 355  Q
    |||| |||||||| |||||| ||||   | ||||||| |||||||| ||| ||||| ||||||||||||||||| ||||  |||  |||||||||||| |    
T  28306210 ttttaagcttatttctgtaagctcttctgtatagcttatgaaaacaacttgtaacttatatgaaaacagtttgactttattttactttttgttatagaga 28306111  T
Q  356 tatcttata 364  Q
    || ||||||    
T  28306110 tagcttata 28306102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 365
Target Start/End: Original strand, 5369732 - 5369816
Alignment:
Q  281 ctctgggatagcttgtgaaaacagcttataac-tatatgaaaacagtttgattttaattatcttttgttatagaaatatcttatac 365  Q
    |||||||||||||| ||||||||||||||| | |||||||||||||||||| ||| ||||  |||| |||||||| || |||||||    
T  5369732 ctctgggatagcttatgaaaacagcttatagcatatatgaaaacagtttgacttt-attaattttttttatagaattagcttatac 5369816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 27492818 - 27492746
Alignment:
Q  287 gatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaata 357  Q
    |||||||| |||||||| ||||| ||| ||||||||| |||||||||||| || | |||||||||||||||||    
T  27492818 gatagcttatgaaaacatcttattacttatatgaaaaaagtttgattttatttgaacttttgttatagaaata 27492746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 33894618 - 33894566
Alignment:
Q  313 tatatgaaaacagtttgattttaattatcttttgttatagaaatatcttatac 365  Q
    |||||||||||||||||| ||   ||||||||||||||||||||| |||||||    
T  33894618 tatatgaaaacagtttgacttattttatcttttgttatagaaatagcttatac 33894566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 365
Target Start/End: Original strand, 5006558 - 5006636
Alignment:
Q  289 tagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatac 365  Q
    |||||| ||||||||  ||||| || ||||||||||||||||| |||| || |||||||||||||| |||| |||||||    
T  5006558 tagcttatgaaaacaatttataccttatatgaaaacagtttgactttattttatcttttgttataggaatagcttatac 5006636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 39551622 - 39551676
Alignment:
Q  313 tatatgaaaacagtttgattttaat-tatcttttgttatagaaatatcttatact 366  Q
    |||||||||||||||| | |||| | |||||||||||||||||||| ||||||||    
T  39551622 tatatgaaaacagttttactttagtatatcttttgttatagaaatagcttatact 39551676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 1373587 - 1373659
Alignment:
Q  287 gatagcttgtgaaaacagcttata-actatatgaaaacagtttgattttaa-ttatcttttgttatagaaata 357  Q
    ||||| || ||||||||| ||||| |||||||||||| ||||||| ||||| ||||||||||| ||| |||||    
T  1373587 gatagtttatgaaaacaggttatagactatatgaaaaaagtttgactttaatttatcttttgtcataaaaata 1373659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 35536114 - 35536050
Alignment:
Q  303 agcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatac 365  Q
    ||||||||||| ||||||||||| ||||| |||| || ||||| ||||||||||||| |||||||    
T  35536114 agcttataacttatatgaaaacaatttgactttattttatcttatgttatagaaatagcttatac 35536050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 39591541 - 39591593
Alignment:
Q  313 tatatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttata 364  Q
    |||||||||||| ||||| |||| || ||||||||||||||||||| ||||||    
T  39591541 tatatgaaaacaatttgactttattttatcttttgttatagaaataacttata 39591593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 43824296 - 43824228
Alignment:
Q  297 gaaaacagcttataact-atatgaaaacagtttgattttaattatcttttgttatagaaatatcttata 364  Q
    ||||| ||||||||||| ||||||||| | ||||||||||||||||||||| || ||||||| ||||||    
T  43824296 gaaaaaagcttataacttatatgaaaagaatttgattttaattatcttttgctaaagaaatagcttata 43824228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 10192308 - 10192235
Alignment:
Q  286 ggatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaat-tatcttttgttatagaaata 357  Q
    ||||||||| |||||||| ||||||||| ||||||||||| ||||| |||| | |||||||||||||| |||||    
T  10192308 ggatagcttttgaaaacaacttataacttatatgaaaacaatttgactttattctatcttttgttataaaaata 10192235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 354
Target Start/End: Original strand, 30207589 - 30207686
Alignment:
Q  258 ttttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaattatcttttgttatagaa 354  Q
    ||||||||||||| |  ||| ||||||  | |||||| |||||||| |||||| || ||||||||||||||||||||   |||| |||||||||||||    
T  30207589 ttttcagcttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaacagtttgatttattttattttttgttatagaa 30207686  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 54325084 - 54325156
Alignment:
Q  287 gatagcttgtgaaaacagcttataact-atatgaaaacagtttgatttta-attatcttttgttatagaaata 357  Q
    |||||||| |||||| |||||||| || ||||||||||||||||| ||||  ||||||||||| |||||||||    
T  54325084 gatagcttttgaaaatagcttatagcttatatgaaaacagtttgactttattttatcttttgtaatagaaata 54325156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 53626795 - 53626729
Alignment:
Q  291 gcttgtgaaaacagcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaa 355  Q
    |||| ||||||||||||||| || ||||||||||| ||||| |||| || |||||||||||||||||    
T  53626795 gcttatgaaaacagcttatagcttatatgaaaacattttgaatttattttatcttttgttatagaaa 53626729  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 3175975 - 3175894
Alignment:
Q  286 ggatagcttgtgaaaacagcttataac-tatatgaaaacagtttgatttta-attatcttttgttatagaaatatcttatac 365  Q
    ||||||||| ||||||||||||||||| ||  |||||||| ||||| ||||  |||||||||| ||||||| || |||||||    
T  3175975 ggatagcttatgaaaacagcttataacttacttgaaaacaatttgactttattttatcttttgctatagaagtagcttatac 3175894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 4191734 - 4191682
Alignment:
Q  315 tatgaaaacagtttgattttaatt--atcttttgttatagaaatatcttatac 365  Q
    |||||||||||||||| |||| ||  ||||||||||||||||||| |||||||    
T  4191734 tatgaaaacagtttgactttatttttatcttttgttatagaaatagcttatac 4191682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 365
Target Start/End: Original strand, 46415838 - 46415919
Alignment:
Q  286 ggatagcttgtgaaaacagcttataacta-tatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatac 365  Q
    ||||||||| |||||| | |||||||||  |||||||||||||||||  || || |||||||||||| |||||| |||||||    
T  46415838 ggatagcttatgaaaagaacttataacttgtatgaaaacagtttgatcctattttatcttttgttattgaaatagcttatac 46415919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 20907371 - 20907323
Alignment:
Q  286 ggatagcttgtgaaaacagcttataac-tatatgaaaacagtttgattt 333  Q
    ||||||||||||||||||| ||||| | |||||||||||| ||||||||    
T  20907371 ggatagcttgtgaaaacagtttatagcttatatgaaaacaatttgattt 20907323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 365
Target Start/End: Original strand, 40304090 - 40304181
Alignment:
Q  275 taaactctctgggatagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatac 365  Q
    |||||| ||| |||||| || |||||||||||||||||| ||||||||||| | |||||||| || ||||||||||||| ||||| |||||||    
T  40304090 taaactatctaggatag-ttatgaaaacagcttataacttatatgaaaacaatgtgattttattttatcttttgttatataaatagcttatac 40304181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 49517091 - 49517013
Alignment:
Q  289 tagcttgtgaaaacagcttataact-atatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatac 365  Q
    |||||| ||||||||||||||| || | ||||||||| ||||| |||| || ||||||||||||||||||| |||||||    
T  49517091 tagcttatgaaaacagcttatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaataacttatac 49517013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 365
Target Start/End: Original strand, 5756702 - 5756813
Alignment:
Q  256 tattttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataact-atatgaaaacagtttgatttta-attatcttttgttataga 353  Q
    |||||||| ||||||   |||| |||||  || ||||||  ||||||| ||||||| | ||||||||||||||| | |||| || |||||||||||||||    
T  5756702 tattttcaacttattttggtaagctctccaggctagcttacgaaaacaacttataatttatatgaaaacagtttaactttatatcatcttttgttataga 5756801  T
Q  354 aatatcttatac 365  Q
    |||| |||||||    
T  5756802 aatagcttatac 5756813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 363
Target Start/End: Original strand, 33527193 - 33527272
Alignment:
Q  286 ggatagcttgtgaaaacagcttata-actatatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttat 363  Q
    ||||| ||| ||||||||||||||| | |||||||||||||||||| | || || |||||||||| |||||||| |||||    
T  33527193 ggataacttatgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttat 33527272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 5160420 - 5160352
Alignment:
Q  296 tgaaaacagcttataact-atatgaaaacagtttgattttaattatcttttgttatagaaatatcttatac 365  Q
    |||||||||||||||||| |||| |||||||||||| |||| |||| | |||||||||||||| |||||||    
T  5160420 tgaaaacagcttataacttatat-aaaacagtttgacttta-ttatatgttgttatagaaatagcttatac 5160352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 366
Target Start/End: Original strand, 4276683 - 4276764
Alignment:
Q  287 gatagcttgtgaaaacagcttataact-atatgaaaacagtttgatttta-attatcttttgttatagaaatatcttatact 366  Q
    |||||||| ||| ||||| ||||| || || |||||||||| ||| |||| ||||||||||||||||||||||  |||||||    
T  4276683 gatagcttatgagaacaggttatagcttatgtgaaaacagtatgactttatattatcttttgttatagaaatagtttatact 4276764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 6074470 - 6074417
Alignment:
Q  313 tatatgaaaacagtttgatttta-attatcttttgttatagaaatatcttatac 365  Q
    |||||||||||||||| | |||| || ||||||||||||||||||| |||||||    
T  6074470 tatatgaaaacagtttaactttatatcatcttttgttatagaaatagcttatac 6074417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 15360890 - 15360845
Alignment:
Q  313 tatatgaaaacagtttgattttaatt-atcttttgttatagaaata 357  Q
    |||||||||||||||||| |||| || |||||||||||||||||||    
T  15360890 tatatgaaaacagtttgactttattttatcttttgttatagaaata 15360845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 23895332 - 23895279
Alignment:
Q  313 tatatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatac 365  Q
    ||||||| |||||||||| |||| || ||||||||||||||||||| |||||||    
T  23895332 tatatgagaacagtttgaatttattttatcttttgttatagaaatagcttatac 23895279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 45999362 - 45999415
Alignment:
Q  313 tatatgaaaacagtttgattttaa-ttatcttttgttatagaaatatcttatac 365  Q
    ||||||||| |||||||| ||||  ||||||||||||||||||||| |||||||    
T  45999362 tatatgaaagcagtttgactttatcttatcttttgttatagaaatagcttatac 45999415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 365
Target Start/End: Complemental strand, 6976919 - 6976891
Alignment:
Q  337 ttatcttttgttatagaaatatcttatac 365  Q
    |||||||||||||||||||||||||||||    
T  6976919 ttatcttttgttatagaaatatcttatac 6976891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 24146334 - 24146386
Alignment:
Q  313 tatatgaaaacagtttgattttaattatcttttgttatagaaatatcttatac 365  Q
    |||||||||| |||||||||| | ||  ||||||||||||||||| |||||||    
T  24146334 tatatgaaaatagtttgatttcatttgacttttgttatagaaataacttatac 24146386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 29007772 - 29007840
Alignment:
Q  296 tgaaaacagcttataact-atatgaaaacagtttgattttaattat-cttttgttatagaaatatctta 362  Q
    |||||||| |||||| || ||||||||| ||||||| ||||||| | ||||||||||||||||| ||||    
T  29007772 tgaaaacaacttatagcttatatgaaaatagtttgactttaatttttcttttgttatagaaataactta 29007840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 365
Target Start/End: Original strand, 29046012 - 29046040
Alignment:
Q  337 ttatcttttgttatagaaatatcttatac 365  Q
    |||||||||||||||||||||||||||||    
T  29046012 ttatcttttgttatagaaatatcttatac 29046040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 365
Target Start/End: Original strand, 11188173 - 11188282
Alignment:
Q  258 ttttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataacta-tatgaaaacagtttgattttaatt-atcttttgttatagaaa 355  Q
    ||||||| ||||| |  |||||||||| ||||||||| | |||| || ||||||||| ||| |||| |||||| ||||| || |||||||||||||||||    
T  11188173 ttttcagtttattaccataaactctctaggatagcttatcaaaatagtttataactaatataaaaatagtttggttttattttatcttttgttatagaaa 11188272  T
Q  356 tatcttatac 365  Q
     | |||||||    
T  11188273 caacttatac 11188282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 10075590 - 10075678
Alignment:
Q  279 ctctctgggatagcttgtgaaaacagcttataac-tatatgaaaacagtttgattttaattat-cttttgttatagaaatatcttatac 365  Q
    |||||| ||||||||| |||||| |||||||||| ||||| |||| ||||||| |||||||||  |||| ||||| ||||| |||||||    
T  10075590 ctctctaggatagcttatgaaaatagcttataacttatataaaaatagtttgactttaattatgtttttattatacaaatagcttatac 10075678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 30277263 - 30277315
Alignment:
Q  258 ttttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttata 310  Q
    ||||||||||||| |  |||||||||| ||||||||| |||||||||||||||    
T  30277263 ttttcagcttatttccataaactctctaggatagcttatgaaaacagcttata 30277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 365
Target Start/End: Complemental strand, 4558829 - 4558741
Alignment:
Q  279 ctctctgggatagcttgtgaaaacagcttataac-tatatgaaaacagtttgattttaatt-atcttttgttatagaaatatcttatac 365  Q
    |||||| ||||||||| || |||||||||||| | |||||||||| | ||| | |||| || ||||||| ||||||||||| |||||||    
T  4558829 ctctctaggatagcttatggaaacagcttatagcatatatgaaaataatttaactttattttatcttttattatagaaatagcttatac 4558741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 8060724 - 8060668
Alignment:
Q  255 ttattttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataa 311  Q
    |||||||||||||||| |  ||| |||||| |||| |||| ||||||||||||||||    
T  8060724 ttattttcagcttatttccataagctctctaggattgcttatgaaaacagcttataa 8060668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 364
Target Start/End: Complemental strand, 31862545 - 31862437
Alignment:
Q  258 ttttcagcttattcctgtaaactctctgggatagcttgtgaaaacagcttataact-atatgaaaacagtttgatttta-attatcttttgttatagaaa 355  Q
    |||||||||||||    ||| |||||| ||||| ||| |||||||| |||||| || ||| || || ||||||| |||| ||||||||||||||| ||||    
T  31862545 ttttcagcttattttcataagctctctaggataacttatgaaaacatcttatagcttatacgagaatagtttgactttatattatcttttgttattgaaa 31862446  T
Q  356 tatcttata 364  Q
    || ||||||    
T  31862445 taacttata 31862437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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