View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20456_low_15 (Length: 490)

Name: NF20456_low_15
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20456_low_15
NF20456_low_15
[»] chr8 (10 HSPs)
chr8 (193-361)||(12483005-12483173)
chr8 (18-144)||(12482836-12482962)
chr8 (193-358)||(12289395-12289560)
chr8 (358-480)||(12483404-12483527)
chr8 (193-361)||(11949337-11949504)
chr8 (285-361)||(12670510-12670586)
chr8 (287-360)||(939435-939508)
chr8 (287-359)||(2105864-2105936)
chr8 (236-361)||(12482728-12482853)
chr8 (193-258)||(11949087-11949152)
[»] chr3 (10 HSPs)
chr3 (194-361)||(3701668-3701834)
chr3 (216-361)||(3712968-3713112)
chr3 (216-361)||(3705418-3705562)
chr3 (286-361)||(3707927-3708002)
chr3 (286-361)||(3719487-3719562)
chr3 (286-360)||(32775269-32775343)
chr3 (286-360)||(32814955-32815029)
chr3 (286-359)||(26807449-26807522)
chr3 (298-362)||(32772688-32772752)
chr3 (297-350)||(41845773-41845826)
[»] chr5 (4 HSPs)
chr5 (283-361)||(31965395-31965473)
chr5 (287-360)||(8219733-8219806)
chr5 (287-359)||(38322601-38322673)
chr5 (287-359)||(38327773-38327845)
[»] chr4 (4 HSPs)
chr4 (287-362)||(26741372-26741447)
chr4 (286-359)||(19185991-19186064)
chr4 (287-358)||(30161835-30161906)
chr4 (287-358)||(51386264-51386335)
[»] chr7 (2 HSPs)
chr7 (286-360)||(25796171-25796245)
chr7 (297-350)||(45343081-45343134)
[»] chr1 (5 HSPs)
chr1 (287-361)||(27981047-27981121)
chr1 (286-359)||(43849047-43849120)
chr1 (286-358)||(30953117-30953189)
chr1 (297-350)||(39755137-39755190)
chr1 (297-350)||(39760491-39760544)
[»] chr6 (1 HSPs)
chr6 (287-359)||(21882907-21882979)
[»] chr2 (4 HSPs)
chr2 (287-359)||(4767493-4767565)
chr2 (287-359)||(38551328-38551400)
chr2 (297-350)||(14428572-14428625)
chr2 (297-350)||(34962092-34962145)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 193 - 361
Target Start/End: Original strand, 12483005 - 12483173
Alignment:
Q  193 gaaggagctcaggggtatatatgtcatccagtatttcaggataagtgatgttacctaacaccacaaacgtcatcatcattgctccatctgaagttgcacc 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| ||||||||||||||||||||    
T  12483005 gaaggagctcaggggtatatatgtcatccagtatttcaggataagtgatgttacctaacatcacagatgtcatcatcatagctccatctgaagttgcacc 12483104  T
Q  293 agctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 361  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12483105 agccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 12483173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 12482836 - 12482962
Alignment:
Q  18 tagaccactggtgctttgttgttacaatctatgagaacatagtatatcttgttttagtacaccagctcttcaacgtggtttcaatatgttgcacctcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  12482836 tagaccactggtgctttgttgttacaatctatgagaacatagtatatcttgttttagtacaccagctcttcaatgtcgtttcaatatgttgcacctcttt 12482935  T
Q  118 aattgattgaataaggttccgtagcac 144  Q
    |||||||||||||||||||| ||||||    
T  12482936 aattgattgaataaggttccctagcac 12482962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 193 - 358
Target Start/End: Complemental strand, 12289560 - 12289395
Alignment:
Q  193 gaaggagctcaggggtatatatgtcatccagtatttcaggataagtgatgttacctaacaccacaaacgtcatcatcattgctccatctgaagttgcacc 292  Q
    |||||||||||||||| ||||||||||||| ||||| |||||| ||||||||||| |||||||||||| | |||||||||||||| ||   | |||||||    
T  12289560 gaaggagctcaggggtgtatatgtcatccattatttgaggataggtgatgttacccaacaccacaaacattatcatcattgctccttcacgaattgcacc 12289461  T
Q  293 agctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 358  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12289460 agccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 12289395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 358 - 480
Target Start/End: Original strand, 12483404 - 12483527
Alignment:
Q  358 tttgacatattgaaattgtgtattgtgttttaaatatatcgacgcaacatcaacacatgttacaatcaattattctcttttg-taagagtcaattttgtt 456  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||| ||    
T  12483404 tttgacatattgaaattgtgtatggtgttttacatatatcgacgcaacatcaacacatgttacaatcaaatattttattttgttaagagtcaattttatt 12483503  T
Q  457 ttagtatatgggattgtgcttcat 480  Q
    ||||||||||||||||||||||||    
T  12483504 ttagtatatgggattgtgcttcat 12483527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 193 - 361
Target Start/End: Original strand, 11949337 - 11949504
Alignment:
Q  193 gaaggagctcaggggtatatatgtcatccagtatttcaggataagtgatgttacctaacaccacaaacgtcatcatcattgctccatctgaagttgcacc 292  Q
    |||||||||||| ||||||| | ||||| ||| |||||||||| | ||||||||| |||||||||||| | |||||||| ||||  ||    ||||||||    
T  11949337 gaaggagctcagaggtatatttatcatcaagtttttcaggatagg-gatgttacccaacaccacaaacattatcatcatagctcattcaagggttgcacc 11949435  T
Q  293 agctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 361  Q
    |||  ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11949436 agccaggaattgaacccgggtctgtagcgtggcagggtactattctaccactagaccactggtgctttg 11949504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 12670510 - 12670586
Alignment:
Q  285 gttgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 361  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12670510 gttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 12670586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 939435 - 939508
Alignment:
Q  287 tgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 360  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  939435 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 939508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 2105936 - 2105864
Alignment:
Q  287 tgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 359  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2105936 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 2105864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 236 - 361
Target Start/End: Original strand, 12482728 - 12482853
Alignment:
Q  236 agtgatgttacctaacaccacaaacgtcatcatcattgctccatctgaagttgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactat 335  Q
    |||||||||||| |||||||||  | | |||||||| ||||  || |  |||||||||||  ||||| ||||||||||||||||| ||||||||||||||    
T  12482728 agtgatgttacccaacaccacatgcattatcatcatagctcattcaggggttgcaccagccaggaattgaacccgggtctgtaccatggcagggtactat 12482827  T
Q  336 tctaccactagaccactggtgctttg 361  Q
    ||||||||||||||||||||||||||    
T  12482828 tctaccactagaccactggtgctttg 12482853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 11949087 - 11949152
Alignment:
Q  193 gaaggagctcaggggtatatatgtcatccagtatttcaggataagtgatgttacctaacaccacaa 258  Q
    |||||| ||||| | |||||  |||||||||||| |||||||| ||||||||||| ||||||||||    
T  11949087 gaaggaactcagagatatattggtcatccagtatctcaggataggtgatgttacccaacaccacaa 11949152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 194 - 361
Target Start/End: Complemental strand, 3701834 - 3701668
Alignment:
Q  194 aaggagctcaggggtata-tatgtcatccagtatttcaggataagtgatgttacctaacaccacaaacgtcatcatcattgctccatctgaagttgcacc 292  Q
    |||||||||||||||||  ||| ||||||| | |||||||| ||||||||||||| ||||||||| |  | |||||||| ||||| ||  || |||||||    
T  3701834 aaggagctcaggggtatggtat-tcatccaatgtttcaggagaagtgatgttaccgaacaccacagatattatcatcatagctccctca-aatttgcacc 3701737  T
Q  293 agctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 361  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3701736 agccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 3701668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 216 - 361
Target Start/End: Complemental strand, 3713112 - 3712968
Alignment:
Q  216 tcatccagtatttcaggataagtgatgttacctaacaccacaaacgtcatcatcattgctccatctgaagttgcaccagctgggaatcgaacccgggtct 315  Q
    ||||||| | |||||||| ||||||||||||| ||||||||| |  | |||||||| ||||| || |||  ||||||||| |||||||||||||||||||    
T  3713112 tcatccaatgtttcaggagaagtgatgttaccgaacaccacagatattatcatcatagctccctc-gaatatgcaccagccgggaatcgaacccgggtct 3713014  T
Q  316 gtaccgtggcagggtactattctaccactagaccactggtgctttg 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3713013 gtaccgtggcagggtactattctaccactagaccactggtgctttg 3712968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 216 - 361
Target Start/End: Complemental strand, 3705562 - 3705418
Alignment:
Q  216 tcatccagtatttcaggataagtgatgttacctaacaccacaaacgtcatcatcattgctccatctgaagttgcaccagctgggaatcgaacccgggtct 315  Q
    ||||||| | |||||||| ||||||||||||| |||| |||| |  | |||||||| ||||| ||  || |||||||||| |||||||||||||||||||    
T  3705562 tcatccaatgtttcaggagaagtgatgttaccgaacaacacatatattatcatcatagctccctcaaaa-ttgcaccagccgggaatcgaacccgggtct 3705464  T
Q  316 gtaccgtggcagggtactattctaccactagaccactggtgctttg 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3705463 gtaccgtggcagggtactattctaccactagaccactggtgctttg 3705418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 3708002 - 3707927
Alignment:
Q  286 ttgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 361  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3708002 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 3707927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 3719562 - 3719487
Alignment:
Q  286 ttgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 361  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3719562 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 3719487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 32775343 - 32775269
Alignment:
Q  286 ttgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 360  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32775343 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 32775269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 32815029 - 32814955
Alignment:
Q  286 ttgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 360  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32815029 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 32814955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 26807449 - 26807522
Alignment:
Q  286 ttgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 359  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26807449 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 26807522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 32772752 - 32772688
Alignment:
Q  298 ggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttga 362  Q
    |||||| |||||  ||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  32772752 ggaatcaaacccaagtctgtaccgtggcagggtactattctaccattaaaccacttgtgctttga 32772688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 41845773 - 41845826
Alignment:
Q  297 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 350  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  41845773 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 41845826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 283 - 361
Target Start/End: Original strand, 31965395 - 31965473
Alignment:
Q  283 aagttgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 361  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31965395 aagttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 31965473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 8219806 - 8219733
Alignment:
Q  287 tgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 360  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8219806 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 8219733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 38322673 - 38322601
Alignment:
Q  287 tgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 359  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322673 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 38322601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 38327845 - 38327773
Alignment:
Q  287 tgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 359  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327845 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 38327773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 287 - 362
Target Start/End: Original strand, 26741372 - 26741447
Alignment:
Q  287 tgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttga 362  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26741372 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttga 26741447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 19186064 - 19185991
Alignment:
Q  286 ttgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 359  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19186064 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 19185991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 30161906 - 30161835
Alignment:
Q  287 tgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 358  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161906 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 30161835  T

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Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 51386264 - 51386335
Alignment:
Q  287 tgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 358  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51386264 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 51386335  T

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Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 25796245 - 25796171
Alignment:
Q  286 ttgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 360  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25796245 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgcttt 25796171  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 45343081 - 45343134
Alignment:
Q  297 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 350  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  45343081 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 45343134  T

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Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 287 - 361
Target Start/End: Complemental strand, 27981121 - 27981047
Alignment:
Q  287 tgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 361  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27981121 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttg 27981047  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 43849047 - 43849120
Alignment:
Q  286 ttgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 359  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43849047 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 43849120  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 30953117 - 30953189
Alignment:
Q  286 ttgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 358  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30953117 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 30953189  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 39755190 - 39755137
Alignment:
Q  297 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 350  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  39755190 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 39755137  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 39760544 - 39760491
Alignment:
Q  297 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 350  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  39760544 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 39760491  T

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Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 21882979 - 21882907
Alignment:
Q  287 tgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 359  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21882979 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 21882907  T

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Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 287 - 359
Target Start/End: Original strand, 4767493 - 4767565
Alignment:
Q  287 tgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 359  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4767493 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 4767565  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 38551400 - 38551328
Alignment:
Q  287 tgcaccagctgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 359  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551400 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctt 38551328  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 14428625 - 14428572
Alignment:
Q  297 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 350  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  14428625 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 14428572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 34962145 - 34962092
Alignment:
Q  297 gggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagacca 350  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  34962145 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 34962092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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