View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_16 (Length: 472)
Name: NF20456_low_16
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 14914596 - 14915046
Alignment:
| Q |
18 |
aattgtagccctgaagggatcagaagttctaatgacattgatagtaagaggatccgaagacccttccgatcaaagtcatataaagttgaaatcaactatg |
117 |
Q |
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| T |
14914596 |
aattgtagccctgaagggatcagaagttctaatgacattgatagtaagaggatccgaagacccttccgatcaaagtcatataaagttgaaatcaactatg |
14914695 |
T |
|
| Q |
118 |
catcaaaaattcctctgcaggccattgacagagccttaaagggtcatgaaaccgagaattatcaagaagccctaagggttctagatactatcttgagaca |
217 |
Q |
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| T |
14914696 |
catcaaaaattcctctgcaggccattgacagagcctttaagggtcaagaaaccgagaattatcaagaagccctaagggttcttgatactatcttgagaca |
14914795 |
T |
|
| Q |
218 |
acatgctgccaaacagtgcgtgttttcattaatatatgtaattttaacttaatatcg---aacaacattaataatagcttttta------attgcagagg |
308 |
Q |
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| T |
14914796 |
acatgctgccaaacagtgcgtgttttcattaatatatgtaattttaacttaatatcgaacaacaacattaataatatctttttaatatccatcgcagagg |
14914895 |
T |
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| Q |
309 |
atgtttgcttgtgtgccaaagtttcttccacaatgatccgaggagtttcaagaatgtaggtggtggagtacttggatgcagagggttgcattcgagcttt |
408 |
Q |
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| T |
14914896 |
atgtttgcttgtgcgccaaagtttcttccataacgatcccaggagtttcaagaatgtaggtggtggagtacttggatgcagagggttgcattcgagcttt |
14914995 |
T |
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| Q |
409 |
agaaccacacaaagtgtaccgtctttgaatataggttaaatcttgatgcct |
459 |
Q |
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| T |
14914996 |
agaaccacacaaagtggactgtgtttgaatataggttaaatcttgatgcct |
14915046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 96 - 459
Target Start/End: Original strand, 38122269 - 38122642
Alignment:
| Q |
96 |
tataaagttgaaatcaactatgcatcaaaaattcctctgcaggccattgacagagccttaaagggtcatgaaaccgagaattatcaagaagccctaaggg |
195 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||| |||||| | |||||||||||||||||| | |||| |
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| T |
38122269 |
tataaagttgaaatcaactttgctaaggaaattcctctgcaggccattgccaatgccttaaaggggcatgaagctgagaattatcaagaagccattaggg |
38122368 |
T |
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| Q |
196 |
ttctagatactatcttgagacaacatgctgccaaacagtgcgtgttttcattaatatatgta-attttaacttaatatcg---aacaacattaataatag |
291 |
Q |
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| T |
38122369 |
ttcttgatattatcttgagacaacattctgccaaacagtgcgtgcttgcataactaaatgcattttttcatgtaatatagaataacaacagtaataatat |
38122468 |
T |
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| Q |
292 |
cttttta------attgcagaggatgtttgcttgtgtgccaaagtttcttccacaatgatccgaggagtttcaagaatgtaggtggtggagtacttggat |
385 |
Q |
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| T |
38122469 |
cttggtattatctattgcaggggctgtctgcttgtgcgccaaaatttctttcacaacgacccaaataatttgaatgatgttggaggtggtgtacttagtt |
38122568 |
T |
|
| Q |
386 |
gcagagggttgcattcgagctttagaaccacacaaagtgtaccgtctttgaatataggttaaatcttgatgcct |
459 |
Q |
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| T |
38122569 |
gcaaagggctgcattccagctttagaaccacacaaagtggattgtctctgaacataggtttgatcttgatgcct |
38122642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 38113762 - 38113913
Alignment:
| Q |
83 |
ccgatcaaagtcatataaagttgaaatcaactatgcatcaaaaattcctctgcaggccattgacagagccttaaagggtcatgaaaccgagaattatcaa |
182 |
Q |
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|||||||||| | || ||||||||||||| || ||| ||||| || |||||||||||||| | || |||||||| || |||||||| |||||||||||| |
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| T |
38113762 |
ccgatcaaagacctacaaagttgaaatcagctttgcctcaaagatccctctgcaggccatcgccaatgccttaaaagggcatgaaactgagaattatcaa |
38113861 |
T |
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| Q |
183 |
gaagccctaagggttctagatactatcttgagacaacatgctgccaaacagt |
234 |
Q |
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| T |
38113862 |
gaagcgattagggttcttgacattatcttgaggcaacatgctgccaaacagt |
38113913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 444
Target Start/End: Original strand, 38114028 - 38114138
Alignment:
| Q |
334 |
ttccacaatgatccgaggagtttcaagaatgtaggtggtggagtacttggatgcagagggttgcattcgagctttagaaccacacaaagtgtaccgtctt |
433 |
Q |
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| T |
38114028 |
ttccacaatgatccgaaaaatttcacagatgtaggaggtggtgttcttggatgcagagggctgcattctagcttcaggaccacacaaagtgggctgtctt |
38114127 |
T |
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| Q |
434 |
tgaatataggt |
444 |
Q |
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||||||||||| |
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| T |
38114128 |
tgaatataggt |
38114138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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