View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_17 (Length: 468)
Name: NF20456_low_17
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 28560474 - 28560032
Alignment:
| Q |
18 |
gtaaccttaggcctccacttgactggtaaacttatgagaatcttgttaacaggatccttagaagaatagcttttgtcaagtacatgcattctagatatca |
117 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28560474 |
gtaaccttgggcctccacttgactagtaaacttatgagaatcttgttaacatgatccttagaagaatagcttttgtcaagtacatgcattctagatatca |
28560375 |
T |
|
| Q |
118 |
aaacatgaaacctagagaacatggttttcaatatcttcatcttcctttatcttctgggtttcatattgtggcactagcaaattggccattgcctccttga |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28560374 |
aaacatgaaacctagagaacatggttttcgatatcttcatcttcctttatcttcagggtttcataccgtggcactagcaaattggccattgcctccttga |
28560275 |
T |
|
| Q |
218 |
tttgctaatttccttcatatgtagtataaagagcatcaaacatactcttaggagtagatttatcaacaatcttgttgaattccttgaattccaaaacatt |
317 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28560274 |
tttgctaatttccttcatatgtagcatagagagcatcaaacgtactcttaggagtagatttatcaacaatcttgttgaattccttgaattccaaaacatt |
28560175 |
T |
|
| Q |
318 |
cacctaaatgtttctcgctttgtgatgctttttgtattccttcttttcatcagtagtcaaacacttcttgtttacagctttaccatctttgttcacaaca |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28560174 |
cacctaaatgtttctcgctttgtgatgctttttgtattccttcttttcatccgtagtcaaacacttcttgtttattgctttaccatctttgttcacaaca |
28560075 |
T |
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| Q |
418 |
acagttgtgccatcttcaatgaaatcccaaatgtcttcatctc |
460 |
Q |
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| T |
28560074 |
tcagttgtgccatcttcaatgaaatcccaaatgtcttcatctc |
28560032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 30343369 - 30342923
Alignment:
| Q |
18 |
gtaaccttaggcctccacttgactggtaaacttatgagaatcttgttaacaggatccttagaagaatagcttttgtcaagtacatgcattctagatatca |
117 |
Q |
| |
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|||||||| || ||||||||||| |||||||| | ||||||||| |||| ||||||||| |||||| || ||||||||||| ||||| | ||||| || |
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| T |
30343369 |
gtaaccttgggtatccacttgacttgtaaacttctatgaatcttgtaaacatgatccttagtagaataactcttgtcaagtacttgcatgccagatacca |
30343270 |
T |
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| Q |
118 |
aa-------acatgaaacctagagaacatggttttcaatatcttcatcttcctttatcttctgggtttcatattgtggcactagcaaattggccattgcc |
210 |
Q |
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| T |
30343269 |
tataccagaacttgaaacctggagaacatggttta-aatatcttcatcttccttcatcttgaaggtttcatactgatgcactagaagattggctttcacc |
30343171 |
T |
|
| Q |
211 |
tccttgatttgctaatttccttcatatgtagtataaagagcatcaaacatactcttaggagtagatttatcaacaatcttgttgaattccttgaattcca |
310 |
Q |
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|| || || |||| |||||||||||| |||| | ||||||||| ||| |||||||| |||||||| |||||| ||||||||| ||||||||||||| | |
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| T |
30343170 |
tctttcatgtgctgatttccttcataagtagcacaaagagcat-aaagatactcttgggagtagaattatcagcaatcttgtctaattccttgaattata |
30343072 |
T |
|
| Q |
311 |
aaacattcacctaaatgtttctcgctttgtgatgctttttgtattccttcttttcatcagtagtcaaacacttcttgtttacagctttaccatctttgtt |
410 |
Q |
| |
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|| |||||||| || ||||| | |||||||||||||||||||||| |||||||||| | | |||||| ||| | | ||| |||||||||||||| |
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| T |
30343071 |
aagcattcaccaaattgtttatgactttgtgatgctttttgtattctttcttttcattatcaatcaaacctttcctctgtactgctttaccatctttacc |
30342972 |
T |
|
| Q |
411 |
cacaacaacagttgtgccatcttcaatgaaatcccaaatgtcttcatct |
459 |
Q |
| |
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||||| |||| || | | ||| | ||||| |||||||||||||||||| |
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| T |
30342971 |
cacaaaaacattttttctatcctaaatgacgtcccaaatgtcttcatct |
30342923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 23212903 - 23212814
Alignment:
| Q |
17 |
agtaaccttaggcctccacttgactggtaaacttatgagaatcttgttaacaggatccttagaagaatagcttttgtcaagtacatgcat |
106 |
Q |
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||||| |||| | ||||||||| | ||||||||| | ||||||||||||||| ||||||||| ||||| ||||||||||||||||| |
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| T |
23212903 |
agtaagcttacgtctccacttggccggtaaacttttaagaatcttgttaacatgatccttagttatgtagctcttgtcaagtacatgcat |
23212814 |
T |
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