View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_18 (Length: 464)
Name: NF20456_low_18
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 5 - 450
Target Start/End: Complemental strand, 37062870 - 37062423
Alignment:
| Q |
5 |
gcaaacaaaagtaaatgatgaaaatgaagtatagaccataacat--acatacctatgcactggctaaatcgagtcttgggcaattttccctccacagcca |
102 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37062870 |
gcaaacaaaagtaaatgatgaaaaggaagtatagaccataacatggacatacctatgcactggctaaatcgagtcttgggcaattttccctccacagcca |
37062771 |
T |
|
| Q |
103 |
actcatcaaaacgcttctcaacttgggaccaaccttcacttccaacgttttttgtcataaacttaagaccttgtagagcacgagcagcaccagattttga |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37062770 |
actcatcaaaacgcttctcaacttgggaccaaccttcacttccaacgttttttgtcataaacttaagaccttgtagagcacgagcagcaccagattttga |
37062671 |
T |
|
| Q |
203 |
cctatcaaccttatcaaacgccttaaaagacgtcatgcgcttcagctcctgagacacctgtctcagtttagccgaaagcgacgatggacgcttctcaagc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37062670 |
cctatcaaccttatcaaacgccttaaaagacgtcatgcgcttcagctcctgagacacctgtctcagtttagccgaaagcgacgatggacgcttctcaagc |
37062571 |
T |
|
| Q |
303 |
tggcttgccagaaacgcggtttcagtgtctccaccgcgaatattctgaacggaaacggagtcatcacgtacgttcaatgttatctccaccatttcaccat |
402 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37062570 |
tggcttgccagaaacgccgtttcagtgtctccaccgcgaatattctgaacggaaacggagtcatcacgtacgttcaatgttatctccaccatttcaccat |
37062471 |
T |
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| Q |
403 |
cgtccttgaagcttgcacttttgttcttgcttcggtttcgttgttttt |
450 |
Q |
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| T |
37062470 |
cgtccttgaagcttgcacttttgttcttgcttcggtttcgttgttttt |
37062423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 51 - 262
Target Start/End: Original strand, 46565725 - 46565939
Alignment:
| Q |
51 |
atacctatgcactggctaaatcgagtcttgggcaattttccctccacagccaactcatcaaaacgcttctcaacttgggaccaacct---tcacttccaa |
147 |
Q |
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||||||||||||||||| || || || ||||| | |||||| || || |||| |||||||| |||||||| || || |||||||| ||| | |||| |
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| T |
46565725 |
atacctatgcactggctgaagcgcgttttggggagttttccatcaacttccaattcatcaaatcgcttctccacctgagaccaaccacgatcagtaccaa |
46565824 |
T |
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| Q |
148 |
cgttttttgtcataaacttaagaccttgtagagcacgagcagcaccagattttgacctatcaaccttatcaaacgccttaaaagacgtcatgcgcttcag |
247 |
Q |
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||||||| |||||||||||||| |||| || |||||||||||||||||||| | |||||||||| |||| ||| ||| |||| |||||||| ||||| |
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| T |
46565825 |
cgtttttggtcataaacttaagtcctttcagtgcacgagcagcaccagatttcgccctatcaaccctatcgaacttctttgaagaagtcatgcgtttcag |
46565924 |
T |
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| Q |
248 |
ctcctgagacacctg |
262 |
Q |
| |
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||||| || ||||| |
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| T |
46565925 |
ttcctgcgaaacctg |
46565939 |
T |
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Back To:
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