View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_2 (Length: 761)
Name: NF20456_low_2
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 17 - 730
Target Start/End: Complemental strand, 29024174 - 29023459
Alignment:
| Q |
17 |
agattttaattcacattgtttgtatcttacatgcatatctactttcttaacccattggctcttctagacactttctaaaggtaaggtcctcaattatata |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | || | || |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29024174 |
agattttaattcacattgtttgtatcttacatgcatatctactctttttttc---tgtctcttctagacactttcttaaggtaaggtcctcaattatata |
29024078 |
T |
|
| Q |
117 |
tagtttcattacattacattagttcttaaacttataaatttggctacaaattaaacttcaatttccaaaaaatagtgtccannnnnnnnaagcatggaaa |
216 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29024077 |
tagtttcattacatta-----gttcttaaacttataaatttggctac----taaacttcaatttccaaaaaatagtgtccattttttttaagcatggaaa |
29023987 |
T |
|
| Q |
217 |
atgaccaaattacaagcaaggaaatgaaagtggagattcaatcaagaagtgaagttatgtcaagtactataggggtagaggtacaaggaggttcaaatat |
316 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29023986 |
atgaacaaattacaagcaaggaaatgaaagtggagattcaatcaaggagtgaagttatgtcaagtactataggggtagaggtacaagggggttcaaatat |
29023887 |
T |
|
| Q |
317 |
gggacaaggtggacttatgagacaacctagtatgactaaaacaaattgtctatgttcaccaacaacacatcctggttcatttcgttgtaggcttcatcgt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29023886 |
gggacaaggtggacttatgagacaacctagtatgaccaaaacaaattgtctatgttcaccaacaacacatcctggttcatttcgttgtaggcttcatcgt |
29023787 |
T |
|
| Q |
417 |
agtcctagtcttcaaaggaccaaaagcatagagccagaatcaatccctgatcagacatctagtataggtcatggttctattgttggtggtgacaaagatc |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29023786 |
agtcctagtcttcaaaggaccaaaagcatagagccagaatcaatccctgatcagacatctactataggtcatggttctattgttggtggtgacaaagatc |
29023687 |
T |
|
| Q |
517 |
gaatccattaatgttatgtttaattgaatgttcaatattatttattattcagtaactatatggttacttttgttctgtataattgttta----------- |
605 |
Q |
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| T |
29023686 |
gaatccattaatgttatgtttaattgaatgttcaatattatttattattcagtaactatatggttacttttgttctgtataattgtttagtcttatatgt |
29023587 |
T |
|
| Q |
606 |
---atctgtgttatgttatgtgtattattgcatgcaattttcttttatttatgtttgttgtaattaaaaggaagcaatctacgtcacgttcttattgatt |
702 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29023586 |
gttatatgtgttatgttatgtgtattattgcatgcaattttcttttatttatgtttgttgtaattaaaaggaagcaatctatgtcacgttcttattgatt |
29023487 |
T |
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| Q |
703 |
ctgaaactggaaatgaaatttggcaatt |
730 |
Q |
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| T |
29023486 |
ctgaaactggaaatgaaatttggcaatt |
29023459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 427
Target Start/End: Complemental strand, 14134028 - 14133921
Alignment:
| Q |
320 |
acaaggtggacttatgagacaacctagtatgactaaaacaaattgtctatgttcaccaacaacacatcctggttcatttcgttgtaggcttcatcgtagt |
419 |
Q |
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||||||||| ||| |||||||| | ||||||| || | |||||| |||| || |||||||||||| |||| |||||| | |||||||| ||||||| |
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| T |
14134028 |
acaaggtggtcttttgagacaagcaagtatgaacaagaacaattgtttatgctctccaacaacacatgctggatcatttaggtgtaggctacatcgtaca |
14133929 |
T |
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| Q |
420 |
cctagtct |
427 |
Q |
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|||||||| |
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| T |
14133928 |
cctagtct |
14133921 |
T |
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Back To:
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