View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20456_low_21 (Length: 412)

Name: NF20456_low_21
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20456_low_21
NF20456_low_21
[»] chr2 (4 HSPs)
chr2 (188-410)||(10034914-10035137)
chr2 (188-410)||(10095283-10095506)
chr2 (14-144)||(10035137-10035267)
chr2 (14-144)||(10095506-10095636)
[»] chr1 (1 HSPs)
chr1 (13-45)||(6901999-6902031)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 188 - 410
Target Start/End: Complemental strand, 10035137 - 10034914
Alignment:
Q  188 ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaacctgcagcatgacagcaggctcccaacagcagcagcaaaacaggtcac 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035137 ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaacctgcagcatgacagcaggctcccaacagcagcagcaaaacaggtcac 10035038  T
Q  288 gcaccccagctgctgcacctccaaacatcaccgaaccaacacattcacaccaaaggaaaaacagctacctcctaccaatccttccaaggcatgataacgg 387  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035037 gcaccccagctgctgcacctccaaacatcaccgaaccaacacacacacaccaaaggaaaaacagctacctcctaccaatccttccaaggcatgataacgg 10034938  T
Q  388 at-ccaacaccgcaattactgggg 410  Q
    || ||||| |||||||||||||||    
T  10034937 atcccaactccgcaattactgggg 10034914  T

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Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 188 - 410
Target Start/End: Complemental strand, 10095506 - 10095283
Alignment:
Q  188 ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaacctgcagcatgacagcaggctcccaacagcagcagcaaaacaggtcac 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10095506 ccagcctcactgcctaaaatccaaacaggcgcacatgcccagcaacaccaaacctgcagcatgacagcaggctcccaacagcagcagcaaaacaggtcac 10095407  T
Q  288 gcaccccagctgctgcacctccaaacatcaccgaaccaacacattcacaccaaaggaaaaacagctacctcctaccaatccttccaaggcatgataacgg 387  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10095406 gcaccccagctgctgcacctccaaacatcaccgaaccaacacacacacaccaaaggaaaaacagctacctcctaccaatccttccaaggcatgataacgg 10095307  T
Q  388 at-ccaacaccgcaattactgggg 410  Q
    || ||||| |||||||||||||||    
T  10095306 atcccaactccgcaattactgggg 10095283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 10035267 - 10035137
Alignment:
Q  14 ttattctcgacgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacctccacccaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035267 ttattctcgacgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacctccacccaa 10035168  T
Q  114 gaagaaaccaaccacaaaacccaacaaaggc 144  Q
    |||||||||||||||||||||||||||||||    
T  10035167 gaagaaaccaaccacaaaacccaacaaaggc 10035137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 10095636 - 10095506
Alignment:
Q  14 ttattctcgacgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacctccacccaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10095636 ttattctcgacgagtatatgcaagacgcacaaccactcgcggcaagaaaagggaaacaatacaacaaggtgccgcctatatgcgtgacacctccacccaa 10095537  T
Q  114 gaagaaaccaaccacaaaacccaacaaaggc 144  Q
    |||||||||||||||||||||||||||||||    
T  10095536 gaagaaaccaaccacaaaacccaacaaaggc 10095506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 6902031 - 6901999
Alignment:
Q  13 attattctcgacgagtatatgcaagacgcacaa 45  Q
    |||||||||| ||||||||||||||||||||||    
T  6902031 attattctcgtcgagtatatgcaagacgcacaa 6901999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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