View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20456_low_24 (Length: 379)

Name: NF20456_low_24
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20456_low_24
NF20456_low_24
[»] chr2 (5 HSPs)
chr2 (16-368)||(16073945-16074298)
chr2 (297-363)||(34566224-34566290)
chr2 (250-361)||(29232333-29232444)
chr2 (250-361)||(29345632-29345743)
chr2 (174-210)||(28231858-28231894)
[»] chr8 (1 HSPs)
chr8 (273-361)||(18916614-18916702)
[»] chr7 (4 HSPs)
chr7 (180-346)||(3553060-3553226)
chr7 (284-363)||(3315640-3315719)
chr7 (245-338)||(23661815-23661908)
chr7 (272-340)||(1675417-1675485)
[»] chr4 (2 HSPs)
chr4 (270-349)||(7220810-7220889)
chr4 (270-361)||(7223761-7223850)
[»] chr1 (1 HSPs)
chr1 (269-363)||(16634922-16635015)
[»] chr3 (1 HSPs)
chr3 (284-359)||(2906036-2906114)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 16073945 - 16074298
Alignment:
Q  16 attgcacggttcagttaaaaaatgttccaaatttatttgaaccaaatgctattttcagtttgggttggttctatttatggttttttcaattggtttagtt 115  Q
    ||||||| ||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||    
T  16073945 attgcacagttcagtaaaaaaatggtccaaacttatttgaaccaaatgctattttcagtttggattggttctatttgtggttttttctattggtttagtt 16074044  T
Q  116 cgattttaaacactcttaatcttaacacataagcttaaggcattatgaatttatgggtagtacatttgtctttggtgaattaaaagaagacacgttgaag 215  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  16074045 cgattttgaacactattaatcttaacacataaccttaaggcattatgaatttatgggtagtacatttgtccttggtgaattaatagaagacacgttgaag 16074144  T
Q  216 aaacgatcaaacc-tttatggagtgtaaattggaggcaacaaatcattctaaagtaagcaaagcaattatgaagtattgttcaacataattatccttaat 314  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16074145 aaacgatcaaaccttttatggagtgtaaattggaggcaacaaatcattctaaagtaagcaaagcaattatgaagtattgttcaacataattatccttaat 16074244  T
Q  315 aggcaaagattttaaatatgaagaaaacttctcaacgaaacttgatgtgatgat 368  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  16074245 aggcaaagattttaaatatgaagaaaacttatcaacgaaacttgatgtgctgat 16074298  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 34566224 - 34566290
Alignment:
Q  297 aacataattatccttaataggcaaagattttaaatatgaagaaaacttctcaacgaaacttgatgtg 363  Q
    ||||||||||||||||||||| |||||||| |||| | ||||||||||||||| ||| |||||||||    
T  34566224 aacataattatccttaataggaaaagatttgaaatctaaagaaaacttctcaaggaagcttgatgtg 34566290  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 361
Target Start/End: Original strand, 29232333 - 29232444
Alignment:
Q  250 gcaacaaatcattctaaagtaagcaaagcaattatgaagtattgttcaacataattatccttaataggcaaagattttaaatatgaagaaaacttctcaa 349  Q
    ||||||||||||||  ||  ||| |||| |||| ||||||| | ||||||  |||||||||||| || |||| |||| |||| | |||||||||||||||    
T  29232333 gcaacaaatcattcccaaagaagaaaagaaattttgaagtactattcaacgaaattatccttaagagacaaatatttgaaatctaaagaaaacttctcaa 29232432  T
Q  350 cgaaacttgatg 361  Q
     ||| |||||||    
T  29232433 ggaagcttgatg 29232444  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 361
Target Start/End: Original strand, 29345632 - 29345743
Alignment:
Q  250 gcaacaaatcattctaaagtaagcaaagcaattatgaagtattgttcaacataattatccttaataggcaaagattttaaatatgaagaaaacttctcaa 349  Q
    ||||||||||||||  ||  ||| |||| |||| ||||||| | ||||||  |||||||||||| || |||| |||| |||| | |||||||||||||||    
T  29345632 gcaacaaatcattcccaaagaagaaaagaaattttgaagtactattcaacgaaattatccttaagagacaaatatttgaaatctaaagaaaacttctcaa 29345731  T
Q  350 cgaaacttgatg 361  Q
     ||| |||||||    
T  29345732 ggaagcttgatg 29345743  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 28231894 - 28231858
Alignment:
Q  174 agtacatttgtctttggtgaattaaaagaagacacgt 210  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  28231894 agtacttttgtccttggtgaattaaaagaagacacgt 28231858  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 18916702 - 18916614
Alignment:
Q  273 caaagcaattatgaagtattgttcaacataattatccttaataggcaaagattttaaatatgaagaaaacttctcaacgaaacttgatg 361  Q
    ||||| ||||||||||| |||||||||| ||||||||| || |||||||||||| |||||| |||||||||||| || |||||||||||    
T  18916702 caaagaaattatgaagtgttgttcaacaaaattatcctcaagaggcaaagatttcaaatataaagaaaacttctaaaggaaacttgatg 18916614  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 346
Target Start/End: Original strand, 3553060 - 3553226
Alignment:
Q  180 tttgtctttggtgaattaaaagaagacacgttgaagaaacgatcaaacctttatggagtgtaaattggaggcaacaaatcattc-taaagtaagcaaagc 278  Q
    |||||| |||||||||||||| |||||||  || ||||||   |||||||||||| |    ||| |||| |||||| ||||||| ||||| |||||||      
T  3553060 tttgtccttggtgaattaaaacaagacacactgtagaaacagacaaacctttatgtaagacaaaatggaagcaacagatcattcctaaag-aagcaaatg 3553158  T
Q  279 aattatgaagtattgttcaacataattatccttaataggcaaagattttaaatatgaagaaaacttct 346  Q
    |||||| ||||||| || ||   |||||||||||| ||||||| ||||||||||||||||||||||||    
T  3553159 aattataaagtattatttaatggaattatccttaagaggcaaacattttaaatatgaagaaaacttct 3553226  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 363
Target Start/End: Complemental strand, 3315719 - 3315640
Alignment:
Q  284 tgaagtattgttcaacataattatccttaataggcaaagattttaaatatgaagaaaacttctcaacgaaacttgatgtg 363  Q
    ||||||| ||||||||| |||||||||||| ||| ||| |||| ||||   ||||||| ||||||| ||| |||||||||    
T  3315719 tgaagtactgttcaacaaaattatccttaagaggaaaatatttgaaatcataagaaaatttctcaaggaagcttgatgtg 3315640  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 23661908 - 23661815
Alignment:
Q  245 tggaggcaacaaatcattctaaagtaagcaaagcaattatgaagtattgttcaacataattatccttaataggcaaagattttaaatatgaaga 338  Q
    |||| |||||| |||||||| ||  |||||||| |||| | ||||| ||||||||  |||||||| | | ||| ||||||||||| ||||||||    
T  23661908 tggatgcaacatatcattcttaaagaagcaaagaaattctaaagtagtgttcaacgaaattatccctcagaggaaaagattttaattatgaaga 23661815  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 1675417 - 1675485
Alignment:
Q  272 gcaaagcaattatgaagtattgttcaacataattatccttaataggcaaagattttaaatatgaagaaa 340  Q
    |||||| |||| || ||| || |||||||||||||||||| | |||||||||||| |||  ||||||||    
T  1675417 gcaaagaaattttgtagtgttattcaacataattatcctttagaggcaaagatttaaaacgtgaagaaa 1675485  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 7220889 - 7220810
Alignment:
Q  270 aagcaaagcaattatgaagtattgttcaacataattatccttaataggcaaagattttaaatatgaagaaaacttctcaa 349  Q
    |||||||| |||||||||||||| || |||||||||||| |||| |||||| ||||| |||| | |||||||||||||||    
T  7220889 aagcaaagaaattatgaagtattattgaacataattatctttaagaggcaacgatttgaaatctaaagaaaacttctcaa 7220810  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 7223850 - 7223761
Alignment:
Q  270 aagcaaagcaattatgaagtattgttcaacataattatccttaataggcaaagattttaaatatgaagaaaacttctcaacgaaacttgatg 361  Q
    |||||||  |||||| ||||||| ||||||| ||||||| ||||  ||||||||||| |||| ||||||||||||||||  ||| |||||||    
T  7223850 aagcaaataaattattaagtattattcaacaaaattatctttaa--ggcaaagatttgaaatctgaagaaaacttctcatggaagcttgatg 7223761  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 363
Target Start/End: Complemental strand, 16635015 - 16634922
Alignment:
Q  269 taagcaaagcaattatgaagtattgttcaacataattatccttaataggcaaagattttaaatatgaagaaaacttctcaacgaaacttgatgtg 363  Q
    |||||||||||||| | ||||| | |||||||||||||||||||||| |||||||||| | ||||| || |||| |||||| ||| |||||||||    
T  16635015 taagcaaagcaattctaaagtactattcaacataattatccttaataagcaaagatttaagatatg-aggaaacgtctcaaggaatcttgatgtg 16634922  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 359
Target Start/End: Complemental strand, 2906114 - 2906036
Alignment:
Q  284 tgaagtattgttcaacataa--ttatccttaataggcaaa-gattttaaatatgaagaaaacttctcaacgaaacttga 359  Q
    ||||||| ||||||||| ||  |||||||||| ||||||| ||||| |||| ||||||||||||||||| ||| |||||    
T  2906114 tgaagtactgttcaacacaaaattatccttaagaggcaaaagatttcaaatttgaagaaaacttctcaaagaagcttga 2906036  T

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