View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_25 (Length: 369)
Name: NF20456_low_25
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 14611786 - 14612146
Alignment:
| Q |
1 |
cttttacagcgtcttgcatacctcaatgttggaatctaccccttcacctccctcttcctcattgtgtattgctttctcccggcactctcattgttcactg |
100 |
Q |
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| T |
14611786 |
cttttacagcgtcttgcatacctcaatgttggaatctaccccttcacctccctcttcctcattgtgtattgctttctcccggcactctcattgttcactg |
14611885 |
T |
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| Q |
101 |
gatattttattgtgcaaaccctcagtgttgcctttttaatctacttgctcctcatgaccgtgtgcttggtggcgcttgcaattctcgaggttaagtggtc |
200 |
Q |
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| T |
14611886 |
gatattttattgtgcaaaccctcagtgttgcctttttaatctacttgctcctcatgaccgtgtgcttggtggcgcttgcaattctcgaggttaagtggtc |
14611985 |
T |
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| Q |
201 |
cggtgtagagttggagcaatggtggagaaatgaacagttttggctcatttctggcactagtgctcatttggcagctgtgatacaaggactgctaaaagtt |
300 |
Q |
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| T |
14611986 |
cggtgtagagttggagcaatggtggagaaatgaacagttttggctcatttctggcactagtgctcatttggcagctgtgatacaaggactgctaaaagtt |
14612085 |
T |
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| Q |
301 |
atagcaggcattgagatttcttttactttgacaaccaaatcaggaggagaagatgatgatg |
361 |
Q |
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| T |
14612086 |
atagcaggcattgagatttcttttactttgacaaccaaatcaggaggagaagatgatgatg |
14612146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 14596784 - 14596424
Alignment:
| Q |
1 |
cttttacagcgtcttgcatacctcaatgttggaatctaccccttcacctccctcttcctcattgtgtattgctttctcccggcactctcattgttcactg |
100 |
Q |
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| T |
14596784 |
cttttacaacgtctcgcttacctcaatgttggtgtctaccccttcacctccatcctcctcattgtgtattgcttcctcccagcactctcattgttttccg |
14596685 |
T |
|
| Q |
101 |
gatattttattgtgcaaaccctcagtgttgcctttttaatctacttgctcctcatgaccgtgtgcttggtggcgcttgcaattctcgaggttaagtggtc |
200 |
Q |
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|||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| |||||||| ||||| |
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| T |
14596684 |
gatattttattgtgcaaaccctaagtatcgcctttttaatctacttgctcaccatgaccgtgtgcttggtggggcttgccattcttgaggttaaatggtc |
14596585 |
T |
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| Q |
201 |
cggtgtagagttggagcaatggtggagaaatgaacagttttggctcatttctggcactagtgctcatttggcagctgtgatacaaggactgctaaaagtt |
300 |
Q |
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| T |
14596584 |
tggcatagagttagagcagtggtggaggaatgaacaattttggctcatatccggcactagtgctcatctggctgctgtcatacaaggactccttaaagtg |
14596485 |
T |
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| Q |
301 |
atagcaggcattgagatttcttttactttgacaaccaaatcaggaggagaagatgatgatg |
361 |
Q |
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|| || || |||||||||||||||||||||||| | |||||||||||||| ||||| |||| |
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| T |
14596484 |
attgctggaattgagatttcttttactttgacatctaaatcaggaggagaggatgacgatg |
14596424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 15416988 - 15416952
Alignment:
| Q |
14 |
ttgcatacctcaatgttggaatctaccccttcacctc |
50 |
Q |
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| T |
15416988 |
ttgcatacctcaatgtcggaatctaccctttcacctc |
15416952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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