View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20456_low_28 (Length: 365)
Name: NF20456_low_28
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_28 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Complemental strand, 19807807 - 19807457
Alignment:
| Q |
15 |
atgaacaatcgcagtgataatttaacaccaaaacctttcaaaaatactataacacaaataagtcatggagaaaattgtgctaacactaacaagttgattc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19807807 |
atgaacaatcgcagtgataatttaacaccaaaacctttcaaaaatactataacacaaataagtcatggagaaaattgtgctaacactaacaagctgattc |
19807708 |
T |
|
| Q |
115 |
aattacgcattagcagcaattgaagagtcaaaagatctgaacacagcgacctagaatgatttgcaatcacccttgcagtcacatgaaatgcaaataagcg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19807707 |
aattacgcattagcagcaattgaagagtcaaaagatctgaacacagcgacctagaatgatttgcaatcacccttgcagtcacatgaaatgcaaataagtg |
19807608 |
T |
|
| Q |
215 |
aaaagtcaagtgacacaatcgatcaagcatttaatgtcataaatgcgggatttgtgcaaagcaaggtagaccgcaactaaagaggtaatacctctttgaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19807607 |
aaaagtcaagtgacacaatcgatcaagcatttaatgtcataaatgcgggatttgtgcaaagcaaggtagaccgcaactaaagaggtaataactctttgaa |
19807508 |
T |
|
| Q |
315 |
aataaatccaacattcaatgtcacaaatgcaacaagaatggaccaaatata |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19807507 |
aataaatccaacattcaatgtcacaaatgcaacaagaatggaccaaatata |
19807457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 258
Target Start/End: Original strand, 19968690 - 19968873
Alignment:
| Q |
74 |
aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaagatctgaacacagcgacctagaatga |
173 |
Q |
| |
|
|||||||||||||| || ||| |||| ||||||||||||||||||||| ||||||||||| |||||| |||| |||| |||||| | | ||||| |
|
|
| T |
19968690 |
aagtcatggagaaagttatgcgcacacaaacaagttgattcaattacgccgtagcagcaattcaagagtaaaaatatctaaacacaataagcataaatga |
19968789 |
T |
|
| Q |
174 |
tttgcaatcacccttgcagtcacatgaaatgcaaataagcgaaaagtcaagtgacacaatcgatcaagcatttaatgtcataaat |
258 |
Q |
| |
|
||||||| || ||||| | || ||||||||||||| || ||| ||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
19968790 |
tttgcaagcatccttggattcctatgaaatgcaaatgagtgaagggtcaagtgaca-aaccaatcaagcatttaatgtcataaat |
19968873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 1347021 - 1347192
Alignment:
| Q |
74 |
aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaa-gatctgaacacagcgacctagaatg |
172 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||| ||||||||| ||| ||||||| ||||||||||| ||||| | | || ||||| ||||| |
|
|
| T |
1347021 |
aagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatg |
1347120 |
T |
|
| Q |
173 |
atttgcaatcacccttgcagtcacatgaaatgcaaataagcgaaa-agtcaagtgacacaatcgatcaagca |
243 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||| ||| | |||| |||||||||||||||| |||||||| |
|
|
| T |
1347121 |
atttgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagca |
1347192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 346
Target Start/End: Original strand, 19653262 - 19653355
Alignment:
| Q |
254 |
taaatgcgggatttgtgcaaagcaaggtagaccgcaactaaagaggtaatacctc-tttgaaaataaatccaacattcaatgtcacaaatgcaa |
346 |
Q |
| |
|
|||||| | ||||||||||| | || |||||||||||| ||||||| ||| || ||| |||| |||||||| ||||||||||||| |||||| |
|
|
| T |
19653262 |
taaatgagtgatttgtgcaacggaatgtagaccgcaaccaaagaggcaatggatctttttaaaacaaatccaatattcaatgtcacagatgcaa |
19653355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 40031413 - 40031335
Alignment:
| Q |
74 |
aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaagatct |
152 |
Q |
| |
|
||||||||||||| ||| ||| ||||||| |||| |||||||||||||| |||||||| | |||||||||||||||| |
|
|
| T |
40031413 |
aagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcatctcaagagtcaaaagatct |
40031335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University