View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_3 (Length: 757)
Name: NF20456_low_3
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 266 - 708
Target Start/End: Original strand, 9036888 - 9037327
Alignment:
| Q |
266 |
aattatataaatgatattataactattagattttattctttgtaggaatcgaaacaatgtctatctatctaaaaccaatacccataggcatagccctcag |
365 |
Q |
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| T |
9036888 |
aattatataaatgatattataactattagatttt--tctttgtaggaatcgaaacaatgtctatctatctaaaaccaatacccataggcatagccctcag |
9036985 |
T |
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| Q |
366 |
tagatgacacgagtatattttagtgatattgaatgataaacccatgaaataaagttcaatatgtatttttcccctnnnnnnntgtatattttctaaaggg |
465 |
Q |
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| T |
9036986 |
tagatgacacgagtatattttagtgatattgaatgataaacccgtgaaataaagttcaatatgtatttttcccctaaaaaaatgtatattttctaaaggg |
9037085 |
T |
|
| Q |
466 |
taatatgtatt-gttattgttaatgaatgtccaaaacgcgtcttcaatctaaatattgaaccaaaaactaannnnnnnagaactgggcatcattttagta |
564 |
Q |
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| T |
9037086 |
taatatgtattggttattgttaatgaatgtccaaaacgcgtcttcaatctaaatattgagccaaaaactaa-ttttttagaactgggcatcattttagta |
9037184 |
T |
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| Q |
565 |
aagcatctcattgaattaaattaatatgttgttctgaaattggtatgttcactaggctaagttacctctgttaattctcttacttcaaatcagtagacga |
664 |
Q |
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| T |
9037185 |
aagcatctcattgaattaaattaatatgttgttctgaaattggtatgtttacttggctaagttacctttgttaattctcttacttcaaatcagtagacga |
9037284 |
T |
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| Q |
665 |
catttaaatgcacaatatgaaaggcatatcaaatggacaatatg |
708 |
Q |
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| T |
9037285 |
catttaaatgcacaatatgtaa-gcatctcaaatgcacaatatg |
9037327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 9036660 - 9036901
Alignment:
| Q |
8 |
gacatcatcacgagcacaaaaacttgagaaacaaaagcaataggccagttatataaataattttttgtactagacttcaaaaacaaaagtgatcgaccca |
107 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||| |
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| T |
9036660 |
gacatcataacgagcacaaaaacttgagaaacaaaagcgataggccagttatataaatgattttttgaactagacttcaaaaacaaaagcgatcgaccca |
9036759 |
T |
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| Q |
108 |
cctaacttcataaacaaatcatt-nnnnnnnnccctcaaccaccggtctaccggagaaaacaccaaagtaagcccaaattttatgaattagacactaact |
206 |
Q |
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| T |
9036760 |
cctaacttcataaacaaatcattaaaaaaaaaacctcaactaccggtctaccggagaaaacaccaaagtaagcccaaattttttgaactagacactaact |
9036859 |
T |
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| Q |
207 |
cccgatctcaaatcaaaaccgatcggccaattatataaatga |
248 |
Q |
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| T |
9036860 |
cccgatctcaaatcaaaaccgatcggccaattatataaatga |
9036901 |
T |
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Back To:
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