View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_31 (Length: 307)
Name: NF20456_low_31
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 65 - 297
Target Start/End: Original strand, 8937936 - 8938169
Alignment:
| Q |
65 |
cagcctcaaaatttggagtcaagaagcttttgccagcttatcttgatccaaatttgcaacttcaagatcttctaacaggtgtaagctttgcttctggtgg |
164 |
Q |
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| T |
8937936 |
cagcctcaaaatttggagtcaagaagcttttgccagcttatcttgatccaaatttgcaacttcaagatcttctaacaggtgtaagctttgcttctggtgg |
8938035 |
T |
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| Q |
165 |
tgcaggatatgatcctctaacttctaaatcagcagtaaataataactatgtccaacactgaatttg-aatctttaattacatgcatagcatatatttaaa |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8938036 |
tgcaggatatgatcctctaacttctaaatcagcagtaaataataactatgtctaacactgaatttgaaatctttaattacatgcatagcatatatttaaa |
8938135 |
T |
|
| Q |
264 |
ctaactataattcttttattgttgtaagtctgtg |
297 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
8938136 |
ctaactataattcttttattgttgtaagtctgtg |
8938169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 65 - 250
Target Start/End: Original strand, 8946302 - 8946484
Alignment:
| Q |
65 |
cagcctcaaaatttggagtcaagaagcttttgccagcttatcttgatccaaatttgcaacttcaagatcttctaacaggtgtaagctttgcttctggtgg |
164 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||| |||||||| |
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| T |
8946302 |
cagcttcaaaatttggagtcaagaagcttttgccaccttatcttgatccgaatttacaacttgaagatctcttaacaggtgtaagctttgcctctggtgg |
8946401 |
T |
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| Q |
165 |
tgcaggatatgatcctctaacttctaaatcagcagtaaataataactatgtccaacactgaatttgaatctttaattacatgcata |
250 |
Q |
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| T |
8946402 |
tgcaggatatgatcctctaacttctcaattagcagta---aataactatgtctaatactgagtttgaattttcaattgcatgcata |
8946484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 31797387 - 31797274
Alignment:
| Q |
72 |
aaaatttggagtcaagaagcttttgccagcttatcttgatccaaatttgcaacttcaagatcttctaacaggtgtaagctttgcttctggtggtgcagga |
171 |
Q |
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|||||||||||||||||| |||| || |||||||||||||| ||| | ||||||| ||||| || || |||||||||||||| || |||||| | ||| |
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| T |
31797387 |
aaaatttggagtcaagaaatttttacctgcttatcttgatcctaatatacaacttcctgatctccttactggtgtaagctttgcctcaggtggttctgga |
31797288 |
T |
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| Q |
172 |
tatgatcctctaac |
185 |
Q |
| |
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|||||||||||||| |
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| T |
31797287 |
tatgatcctctaac |
31797274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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