View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_34 (Length: 285)
Name: NF20456_low_34
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 4653360 - 4653091
Alignment:
| Q |
1 |
accacacaaaatatcgtgatgtcatattgaatggaatccagattttaaaagaaagtgactacaacgacaatcttgcaggatcaataacaaaatccattga |
100 |
Q |
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| T |
4653360 |
accacacaaaataccgcgatgtcatattgaatggaatccagattttaaaagaaagtgactacaacgacaatctcgcaggatcaataacaaaatccattga |
4653261 |
T |
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| Q |
101 |
tcaggatttttcaacccaatcatcnnnnnnnnttaagatcaccatagcgattgttgcgacgattatagtttccggcctcttgctagcaatgatcgtaggc |
200 |
Q |
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| T |
4653260 |
tcaggaattttcaacccaatcaccaaaaaaaattaagatcaccatagcgattgttgcgacgattgtagtttccagcctcttgctagcaatgatcgtaggc |
4653161 |
T |
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| Q |
201 |
aacacannnnnnnggctaaggaaaaagcttcatattgtcatgaaagatagctcatcaaagacaaagaaca |
270 |
Q |
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| T |
4653160 |
aacacatttttttggctaaggaaaaagcttcatattgtcatgaaagatagctcatcaaagacaaagaaca |
4653091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 4666740 - 4666671
Alignment:
| Q |
30 |
aatggaatccagattttaaaagaaagtgactacaacgacaatcttgcaggatcaataacaaaatccattg |
99 |
Q |
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| T |
4666740 |
aatggaatcgagattttaaaaataagtgacaaaaataacaatctcgcaggaccaatatcaaaatccattg |
4666671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 18926009 - 18926104
Alignment:
| Q |
7 |
caaaatatcgtgatgtcatattgaatggaatccagattttaaaagaaagtgactacaacgacaatcttgcaggatcaataacaaaatccattgatc |
102 |
Q |
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| T |
18926009 |
caaaataccgtaatgtcacattgaatgggatcgagattttgaaaataagtgacaaaaataacaatctcgcaggatcaatatcaaaatccaatgatc |
18926104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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