View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_35 (Length: 269)
Name: NF20456_low_35
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 262
Target Start/End: Original strand, 40227033 - 40227274
Alignment:
| Q |
21 |
aattgtgtcattatataaagttgtttcctcaatataggattttaggtggtttttcttaggttccaatttatcatgccagctaacagaaggagaactcttt |
120 |
Q |
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| T |
40227033 |
aattgtgtcattatataaagttgtttcctcaatataggattttaggtggtttttcttaggttccaatttatcatgccagctaacagaaggagaactcttt |
40227132 |
T |
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| Q |
121 |
tatggattcataatagtaaataatgacaactattaatttttcatggaccatttttaacgttggatccttcccatctacctcaattatgttttgtttcatt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40227133 |
tatggattcataatagtaaataatgacaactattaatttttcatggaccatttttaacgttggatccttcccatctacctcaattatgttttgtttcatt |
40227232 |
T |
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| Q |
221 |
aaggggcgtacctaattttacctatattaataatattcttcg |
262 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40227233 |
aaggggcgtacctaattttacctatattaataatatttttcg |
40227274 |
T |
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