View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_37 (Length: 266)
Name: NF20456_low_37
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 33902486 - 33902240
Alignment:
| Q |
1 |
tttcatggatttaagaatagaaataacttcttttgcatcaggtttcagtggatcagacacagccaaaactccaacaatttctccatccaatgataccaaa |
100 |
Q |
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| T |
33902486 |
tttcatggatttaagaatagaaataacttcttttgcatcaggtttcagtggatcagacacagccaaaactccaacaatttctccatccaatgataccaaa |
33902387 |
T |
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| Q |
101 |
attcctgtttgagccatgttttcagcttctgctagtatttcttcagcttccactgaaatagctatgttatgatctaacatcagttttttatttccaacca |
200 |
Q |
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| T |
33902386 |
attcctgtttgagccatgttttcagcttctgctagtatttcttcagcttccactgaaatagctatgttatgatctaacatcagttttttatttccaacca |
33902287 |
T |
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| Q |
201 |
ttatttccttgttttgaacaattgctttcactccatgtcctgcaata |
247 |
Q |
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| T |
33902286 |
ttatttccttgttttgaacaattgctttcactccatgtcctgcaata |
33902240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 33919566 - 33919336
Alignment:
| Q |
1 |
tttcatggatttaagaatagaaataacttcttttgcatcaggtttcagtggatcagacacagccaaaactccaacaatttctccatccaatgataccaaa |
100 |
Q |
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| T |
33919566 |
tttcatggatttaagaatagaaataacttcttttgcatcaggtttcagtggatcagacacagccaaaactccaacaatttctccatccaatgataccaaa |
33919467 |
T |
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| Q |
101 |
attcctgtttgagccatgttttcagcttctgctagtatttcttcagcttccactgaaatagctatgttatgatctaacatcagttttttatttccaacca |
200 |
Q |
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| T |
33919466 |
attcctgtttgagccatgttttcagcttctgctagtatttcttcagcttccactgaaatagctatgttatgatctaacatcagttttttatttccaacca |
33919367 |
T |
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| Q |
201 |
ttatttccttgttttgaacaattgctttcac |
231 |
Q |
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| T |
33919366 |
ttatttccttgttttgaacaattgccttcac |
33919336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 2775455 - 2775510
Alignment:
| Q |
92 |
gataccaaaattcctgtttgagccatgttttcagcttctgctagtatttcttcagc |
147 |
Q |
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| T |
2775455 |
gatactaaaattcctgtttgagccatgttttcggcttcagcaagtagatcttcagc |
2775510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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