View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_38 (Length: 262)
Name: NF20456_low_38
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 41461145 - 41461389
Alignment:
| Q |
1 |
tatgctcttaagatatatgttcgcagatttctaagttaaaaatatatgtatgatcacatgtaggaataaattatatcannnnnnnaaagcacaatttcct |
100 |
Q |
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| T |
41461145 |
tatgctcttaagatatatgtttgcagatttctaagttaaaaatatatatatgatcacatgtaggaataaattatatcattttttttaagcacaatttctt |
41461244 |
T |
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| Q |
101 |
tttcattaatccacattacattcgtttattaaagagtaaaatattgaatttataagagaagtgacacattaatctaatgtcttgaggattttggatggag |
200 |
Q |
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| T |
41461245 |
tttcattaatccacattacattcgtttattaaaaagtaaaatattgaatttataagagaggtgacacattaacctaatgtcttaaggattttggatggag |
41461344 |
T |
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| Q |
201 |
acgtgacatctttctcttgtgattttgaaacattgaagtcgttct |
245 |
Q |
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| T |
41461345 |
acgtgacatctttctcttatgattttgaaacattggagtcgttct |
41461389 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 30343639 - 30343578
Alignment:
| Q |
175 |
taatgtcttgaggattttggatggagacgtgacatctttctcttgtgattttgaaacattga |
236 |
Q |
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| T |
30343639 |
taatgtctttaaggttttggatggagatgtgacgtctctctcttgtgatcttgaaacattga |
30343578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 14221284 - 14221336
Alignment:
| Q |
148 |
atttataagagaagtgacacattaatctaatgtcttgaggattttggatggaga |
201 |
Q |
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| T |
14221284 |
atttataagagaggtgactcattaatctaatgtattaagg-ttttggatggaga |
14221336 |
T |
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