View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20456_low_4 (Length: 741)
Name: NF20456_low_4
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 9 - 722
Target Start/End: Complemental strand, 4677696 - 4676978
Alignment:
| Q |
9 |
agcagagaatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagta |
108 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4677696 |
agcagagaatagaaatagaaatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcatcagta |
4677597 |
T |
|
| Q |
109 |
aaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4677596 |
aaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtag |
4677497 |
T |
|
| Q |
209 |
ttccaagatctattcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaagaagctgnnnnnnnnnnnnnnntatcaagtcaag |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4677496 |
ttccaagatctattcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaagaagctgaaaaaaaaaaaa---tatcaagtcaag |
4677400 |
T |
|
| Q |
309 |
at---aagtaggaacttaattttgaaacaatacatagtannnnnnnnnncctaaaactcatgcatattctttaccggttgatttactataccaagcgtga |
405 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4677399 |
attataagtaggaacttaattttgaaacaatacatagtatttttttt--cctaaaactcatgcatattctttaccggttgatttactatactaagcgtga |
4677302 |
T |
|
| Q |
406 |
nnnnnnngaattcttccaatatattttctaagattagaaagaagtagaacctttaggttttgttaccacaatgaacaacactttcttaaataggagaaac |
505 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4677301 |
tttttttgaattcttctaatatattttctaagattagaaagaagtagaacctttaggttttgttaccacaatgaacaacactttcttaaataggagaaac |
4677202 |
T |
|
| Q |
506 |
ataaattttgatcatagcataaatatgaatgactaaagagtcgtga----gattatttccaatttgatgggatacataccttagttattgggcaaaaaca |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4677201 |
ataaattttgatcatagcataaatatgaatgactaaagagtcgtgagattgattatttccaatttgatgggatacataccttagttattgggcaaaaaca |
4677102 |
T |
|
| Q |
602 |
atactcgagcggtgaaatggtacatgtaggctgtagcgatggaaatat---ataaataggtcacaacaagaaataatgaaaacaagggaagggtaaagga |
698 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4677101 |
atactcgagcggtgaaatggtacatgtaggctgtagcgatggaaatatataataaataggtcacaccaagaaataatgaaaacaagggaagggtaaagga |
4677002 |
T |
|
| Q |
699 |
aagtgcaaagaaaagagaatatga |
722 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
4677001 |
aagtgcaaagaaaagagaacatga |
4676978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 31 - 265
Target Start/End: Complemental strand, 34465382 - 34465148
Alignment:
| Q |
31 |
ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg |
130 |
Q |
| |
|
|||||||| |||||||| | | |||||| |||| ||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||| | |
|
|
| T |
34465382 |
ttaccaaaaacagtgttctgtgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtgg |
34465283 |
T |
|
| Q |
131 |
ttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagc |
230 |
Q |
| |
|
|| |||| ||||| ||||||| ||||||||| ||||| |||| | ||| |||| || ||||||||||| || || || ||||| |||||||||||||| |
|
|
| T |
34465282 |
ttgtgttaccttggtcattgtcaataatctctactctactgtgttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcccacagc |
34465183 |
T |
|
| Q |
231 |
acgtccttcatactttacccccatgatctttcaaa |
265 |
Q |
| |
|
|||||||||| | ||| | ||||||||||||||| |
|
|
| T |
34465182 |
acgtccttcacattttttcgccatgatctttcaaa |
34465148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 15596021 - 15596220
Alignment:
| Q |
24 |
tagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaa |
123 |
Q |
| |
|
|||| ||||||||||||| ||||||| | || || ||||| |||| |||||||||||| |||||||||||||||||| | ||| |||| |||||||||| |
|
|
| T |
15596021 |
tagaaatttaccaaagac-gtgtttttggggtcggaggcagcttgactcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaa |
15596119 |
T |
|
| Q |
124 |
ggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattc |
223 |
Q |
| |
|
||||| || |||| ||||| ||||||| |||||||| ||||| || || | || ||||||||||||||||| ||||| || |||||||| ||||||| |
|
|
| T |
15596120 |
ggtgtaattctgtttccttggtcattgtggataatctcgactctattctgttcatcaagccacacagcaacacaagaatacgttgttccaaggtctattc |
15596219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 52549080 - 52549023
Alignment:
| Q |
182 |
gccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttc |
239 |
Q |
| |
|
|||| ||||||||||||||||| ||||| | ||| ||||||||||||||| ||||||| |
|
|
| T |
52549080 |
gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttc |
52549023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 1e-83; HSPs: 23)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 1302260 - 1302529
Alignment:
| Q |
12 |
agagaatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaa |
111 |
Q |
| |
|
|||||||| ||| ||| |||||||||| ||||| ||||||| ||||| |||| |||||||||||||||| ||| |||||||||||||| || || ||| |
|
|
| T |
1302260 |
agagaatacaaagagaaatttaccaaaaacagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaa |
1302359 |
T |
|
| Q |
112 |
gcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttc |
211 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||| || ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1302360 |
gcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccacacagcaacacacgaataagtagttc |
1302459 |
T |
|
| Q |
212 |
caagatctattcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaagaagctg |
281 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
1302460 |
caaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaaataatcaaaagaagctg |
1302529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 8660193 - 8660462
Alignment:
| Q |
12 |
agagaatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaa |
111 |
Q |
| |
|
|||||||| ||||||| ||| |||||| ||||||||| ||| ||||| |||| |||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
8660193 |
agagaatacaaatagaaattaaccaaaaacagtgtttacaggattggttgcagcctgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaa |
8660292 |
T |
|
| Q |
112 |
gcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttc |
211 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| || ||||| || ||||| |||| ||||||||||||||||||||||||||||| ||||| || |||| |
|
|
| T |
8660293 |
gcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatctcgactcgattgtgattctccagccacacagcaacacacgaataggttgttc |
8660392 |
T |
|
| Q |
212 |
caagatctattcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaagaagctg |
281 |
Q |
| |
|
|||| |||||||| | |||||||||||| ||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
8660393 |
caaggtctattccaatagcacgtccttcgtactttatccccatgatcgttcaaataatcaaaagaagctg |
8660462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 3148333 - 3148554
Alignment:
| Q |
25 |
agatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaag |
124 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||| || ||||||||||||||||| ||||| |||||||||||| ||||| |||||||||||||||| |
|
|
| T |
3148333 |
agatatttaccaaaaacagtgttttcagggtttgtgggagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaag |
3148432 |
T |
|
| Q |
125 |
gtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcc |
224 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||||||| ||||||||||| | || ||||| |||||||| || ||||| || |||||||| || ||||| |
|
|
| T |
3148433 |
gtgtggttttgttgccttggtcattgtgaataatctcaactctgttgtgctcatcgagccaaacagcaacgcacgaatacgttgttccaaggtcgattcc |
3148532 |
T |
|
| Q |
225 |
cacagcacgtccttcatacttt |
246 |
Q |
| |
|
||| |||| |||||| |||||| |
|
|
| T |
3148533 |
cactgcacatccttcgtacttt |
3148554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 8655298 - 8655522
Alignment:
| Q |
12 |
agagaatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaa |
111 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||||||| | |||||| ||||||||||||| ||| |||| |||||||||||||||| ||||| ||| |
|
|
| T |
8655298 |
agagaataaaaatagaaatttaccaaatacagtgttttcggggttggtagcagattgattctcagctccattgccaatcaacctttgataatcagtgaaa |
8655397 |
T |
|
| Q |
112 |
gcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttc |
211 |
Q |
| |
|
||||||| ||||||||| ||| | |||||||| ||||||| ||||||||| ||||| ||||||| || ||||||||||||||||||||||| || |||| |
|
|
| T |
8655398 |
gcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagccacacagcaacacatgaataggttgttc |
8655497 |
T |
|
| Q |
212 |
caagatctattcccacagcacgtcc |
236 |
Q |
| |
|
| || |||||||| ||||||||||| |
|
|
| T |
8655498 |
cgaggtctattccgacagcacgtcc |
8655522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 8668418 - 8668641
Alignment:
| Q |
16 |
aatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaa |
115 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||| ||| || |||||||||||||||||||||| |||||||||||||| || | | ||||||| |
|
|
| T |
8668418 |
aatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaa |
8668517 |
T |
|
| Q |
116 |
caaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaag |
215 |
Q |
| |
|
|||||||||||||| || ||| ||||| ||||||| ||||||||| ||||| | ||| | || ||||||||||||||||||||||| || |||||||| |
|
|
| T |
8668518 |
caaaagaaggtgttattcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacatgaataggttgttccaag |
8668617 |
T |
|
| Q |
216 |
atctattcccacagcacgtccttc |
239 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
8668618 |
atctattcccactgcacgtccttc |
8668641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 6790377 - 6790586
Alignment:
| Q |
30 |
tttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgtt |
129 |
Q |
| |
|
|||||| |||| |||||||| | ||||||||||| ||||| ||||||||||| ||| ||||||||||| || || || |||||||||||||||||||| |
|
|
| T |
6790377 |
tttaccgaagatagtgttttgcgggttggtggcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtg |
6790476 |
T |
|
| Q |
130 |
gttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacag |
229 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||||| ||||| ||||| | || ||||||||| ||||||| ||||| || ||||| || ||||||||||||| |
|
|
| T |
6790477 |
gttttgttaccttggtcattgtgaataatctcaactctattgtgttcatcaagccacacaccaacacaagaatatgttgttcccaggtctattcccacag |
6790576 |
T |
|
| Q |
230 |
cacgtccttc |
239 |
Q |
| |
|
||| |||||| |
|
|
| T |
6790577 |
cacatccttc |
6790586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 67 - 264
Target Start/End: Complemental strand, 7876932 - 7876735
Alignment:
| Q |
67 |
tgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactc |
166 |
Q |
| |
|
||||| || ||||||| |||||||||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||| |||||| || |||| |
|
|
| T |
7876932 |
tgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataatttcgactc |
7876833 |
T |
|
| Q |
167 |
tgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttcatactttacccccatgatctttcaa |
264 |
Q |
| |
|
| ||||| | || ||||||||||||||||| ||||| || |||||||| ||||||||||| ||||||||||| || ||| | |||| ||||||||| |
|
|
| T |
7876832 |
tattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttcgtattttttcgccataatctttcaa |
7876735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 22 - 274
Target Start/End: Original strand, 8647660 - 8647912
Alignment:
| Q |
22 |
aatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaag |
121 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||| | |||| ||||| ||||| |||| |||||||||||||||||| || || ||||||||||||| |
|
|
| T |
8647660 |
aatagaaatttaccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaag |
8647759 |
T |
|
| Q |
122 |
aaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctat |
221 |
Q |
| |
|
||||||| ||| |||| ||||| ||||||| ||||||||| ||||| ||||| | || ||||||||||||||||| ||||| || |||||||| ||||| |
|
|
| T |
8647760 |
aaggtgtagttctgtttccttgatcattgtgaataatctcaactctattgtgttcatcaagccacacagcaacacacgaatacgttgttccaaggtctat |
8647859 |
T |
|
| Q |
222 |
tcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaa |
274 |
Q |
| |
|
|||||| ||| ||||||| | ||| | |||||||||||||| ||| ||||| |
|
|
| T |
8647860 |
tcccactgcaagtccttcgtgttttttcgccatgatctttcaagtaaacaaaa |
8647912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 32 - 239
Target Start/End: Complemental strand, 13332283 - 13332076
Alignment:
| Q |
32 |
taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt |
131 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||||||||||||||| ||||||| ||||||||| |||||||| | | |||||||||||||||||||| || |
|
|
| T |
13332283 |
taccaaagatagtgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagt |
13332184 |
T |
|
| Q |
132 |
tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagca |
231 |
Q |
| |
|
| | || ||||| ||||||| ||||||||| ||||| | ||| | || |||||||||||||||||||| || || |||||||| || |||||||| ||| |
|
|
| T |
13332183 |
tctatttccttgatcattgtgaataatctcaactctttggtgttcatcaagccacacagcaacacatgagtaggttgttccaaggtcgattcccactgca |
13332084 |
T |
|
| Q |
232 |
cgtccttc |
239 |
Q |
| |
|
|||||||| |
|
|
| T |
13332083 |
cgtccttc |
13332076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 10493134 - 10492939
Alignment:
| Q |
32 |
taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt |
131 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||| | | |||||||||||||||||||| || |
|
|
| T |
10493134 |
taccaaagacggtgttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagt |
10493035 |
T |
|
| Q |
132 |
tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccac |
227 |
Q |
| |
|
| | || ||||| ||||||| |||||| || ||||| | ||| | || ||||| |||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
10493034 |
tctatttccttgatcattgtgaataatttcaactctttggtgttcatcaagccatacagcaacacatgagtaggttgttccaagatctattcccac |
10492939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 32 - 246
Target Start/End: Complemental strand, 27829478 - 27829264
Alignment:
| Q |
32 |
taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt |
131 |
Q |
| |
|
||||||||| |||||||| || ||||| |||| ||| ||||||||||||| |||||||||||| || | ||| || ||||||||| ||||||||||||| |
|
|
| T |
27829478 |
taccaaagatagtgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgt |
27829379 |
T |
|
| Q |
132 |
tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagca |
231 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| | ||| ||||| | ||||| || || || || || || || || |||||||||| | |
|
|
| T |
27829378 |
cttgttgccttgttcattgtgaataatctccactctgttgtgttgatcctgccacgctgcaacgcacgagtacgttgtacctaggtcaattcccacagaa |
27829279 |
T |
|
| Q |
232 |
cgtccttcatacttt |
246 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
27829278 |
agcccttcatacttt |
27829264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 8630197 - 8630401
Alignment:
| Q |
32 |
taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt |
131 |
Q |
| |
|
|||||||||||||||||| | |||| |||||| |||| |||||||||| ||||| |||||||||||| || ||||||||||| || |||||||| | |
|
|
| T |
8630197 |
taccaaagacagtgttttgtgggttgatggcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgat |
8630296 |
T |
|
| Q |
132 |
tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagca |
231 |
Q |
| |
|
||| ||||||| ||||||| ||||||||| |||||||| | | |||| ||| ||| ||||||| ||||| || |||||||| ||||||||||||||| |
|
|
| T |
8630297 |
tttattgccttcatcattgtgaataatctcaactctgttcttttcttccaaccaaacaccaacacaagaataggttgttccaaggtctattcccacagca |
8630396 |
T |
|
| Q |
232 |
cgtcc |
236 |
Q |
| |
|
|||| |
|
|
| T |
8630397 |
tgtcc |
8630401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 8584685 - 8584470
Alignment:
| Q |
16 |
aatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaa |
115 |
Q |
| |
|
|||||| ||||| || |||||||||||||||| || | |||| | |||| |||| |||||||||| ||||| |||||||||||| || |||||||||| |
|
|
| T |
8584685 |
aatagagatagaaatataccaaagacagtgttctctgggttgatagcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaa |
8584586 |
T |
|
| Q |
116 |
caaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaag |
215 |
Q |
| |
|
|||| |||||||| |||| ||||||| || |||| ||||||||| |||||||| | | |||| ||| ||| ||||||| ||||| || |||||||| |
|
|
| T |
8584585 |
caaaggaaggtgtgattttattgccttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaacaccaacacaagaataggttgttccaag |
8584486 |
T |
|
| Q |
216 |
atctattcccacagca |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8584485 |
gtctattcccacagca |
8584470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 31 - 224
Target Start/End: Original strand, 17269068 - 17269261
Alignment:
| Q |
31 |
ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg |
130 |
Q |
| |
|
||||||||||| |||||||| | ||| |||||| |||||||||||| | || ||| || ||||||| ||| | || ||||||||||||||| || || | |
|
|
| T |
17269068 |
ttaccaaagacggtgttttctgggttcatggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtag |
17269167 |
T |
|
| Q |
131 |
ttttgttgccttgttcattgtaaataatctccactctgttgtgattctcca-gccacacagcaacacatgaataagtagttccaagatctattcc |
224 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||||| ||| |||| || ||||||||||||||||||| || || || ||||| |||||||| |
|
|
| T |
17269168 |
ttttgttgccttgatcattgtgtataatctcaactctaccgtg-ttcttcatgccacacagcaacacatgagtatgtcgtcccaaggtctattcc |
17269261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 8610662 - 8610843
Alignment:
| Q |
61 |
gcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatct |
160 |
Q |
| |
|
|||| |||||| |||||||||| ||| |||||||||||||| ||| ||||||||||||||||| || ||| |||| ||||| ||||| | || |||| |
|
|
| T |
8610662 |
gcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatct |
8610761 |
T |
|
| Q |
161 |
ccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttcata |
242 |
Q |
| |
|
| ||||||||| | ||| |||| ||||||||||||||||| || ||||||||||| ||||| | |||| |||| ||||| |
|
|
| T |
8610762 |
cagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaatagcaggtccctcata |
8610843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 67 - 215
Target Start/End: Original strand, 8602738 - 8602886
Alignment:
| Q |
67 |
tgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactc |
166 |
Q |
| |
|
||||| || ||||||| ||| |||||||||| ||| ||||||||||||||||||||||| || ||| |||| ||||| ||||||| ||||||||| | | |
|
|
| T |
8602738 |
tgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgccc |
8602837 |
T |
|
| Q |
167 |
tgttgtgattctccagccacacagcaacacatgaataagtagttccaag |
215 |
Q |
| |
|
|||||| | ||| |||| ||||| ||||||||||| || |||||||| |
|
|
| T |
8602838 |
tgttgttttggtcctgccaaacagctacacatgaataggttgttccaag |
8602886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 17261360 - 17261496
Alignment:
| Q |
31 |
ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg |
130 |
Q |
| |
|
||||||||||| |||||||| | ||| |||||| |||||||||||| |||| ||| |||||||||| ||| | || |||||||||||||||||| || |
|
|
| T |
17261360 |
ttaccaaagacggtgttttctgggtttatggcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaa |
17261459 |
T |
|
| Q |
131 |
ttttgttgccttgttcattgtaaataatctccactct |
167 |
Q |
| |
|
||||||| ||||| ||||||| ||| ||||| ||||| |
|
|
| T |
17261460 |
ttttgtttccttgatcattgtgaatgatctcaactct |
17261496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 8591411 - 8591496
Alignment:
| Q |
76 |
gcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctc |
161 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||||||||||||||||||| || | || ||||| ||||||| ||||||||| |
|
|
| T |
8591411 |
gcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaattctatttccttgatcattgtgaataatctc |
8591496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 8582661 - 8582751
Alignment:
| Q |
61 |
gcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgt |
151 |
Q |
| |
|
|||| |||||| || ||||||| ||||||||| |||||| | ||||||||||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
8582661 |
gcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgt |
8582751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 8635588 - 8635513
Alignment:
| Q |
76 |
gcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgt |
151 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| ||||||||| |||||||||| || |||| ||||| ||||||| |
|
|
| T |
8635588 |
gcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtgattctgttcccttgctcattgt |
8635513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 8546721 - 8546776
Alignment:
| Q |
109 |
aaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccac |
164 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| ||||||| ||| || ||||| |
|
|
| T |
8546721 |
aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccac |
8546776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 242
Target Start/End: Complemental strand, 29581263 - 29581088
Alignment:
| Q |
67 |
tgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactc |
166 |
Q |
| |
|
||||| ||||||||||||| ||||||||| | |||||| ||||| |||| ||||||||| ||| |||||||| ||||||| || ||||| ||| |
|
|
| T |
29581263 |
tgatttttagcagcattactaatcaacctcagtgagtcagtgaaagctacaacagaaggtgtggttccattgccttgatcattgtggatgatctcagctc |
29581164 |
T |
|
| Q |
167 |
tgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttcata |
242 |
Q |
| |
|
|||| ||||||| |||| || || ||||||||||| || || || || || ||||| | |||| |||||||||| |
|
|
| T |
29581163 |
ggttgatattctcctgccaaactgctacacatgaataggttgtgccgaggtcgattccgatagcaggtccttcata |
29581088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 8104069 - 8104151
Alignment:
| Q |
67 |
tgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcatt |
149 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| | ||||| ||||||||| |||| ||||| ||| |||| ||||| ||||| |
|
|
| T |
8104069 |
tgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcatt |
8104151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 8e-54; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 9323213 - 9322990
Alignment:
| Q |
16 |
aatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaa |
115 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||| || | | ||||||| |
|
|
| T |
9323213 |
aatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaa |
9323114 |
T |
|
| Q |
116 |
caaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaag |
215 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||||||| ||||||||| ||||| | ||| | || ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
9323113 |
caaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag |
9323014 |
T |
|
| Q |
216 |
atctattcccacagcacgtccttc |
239 |
Q |
| |
|
|||||| ||||| ||||||||||| |
|
|
| T |
9323013 |
atctatacccactgcacgtccttc |
9322990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 9377692 - 9377469
Alignment:
| Q |
16 |
aatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaa |
115 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||| || | | ||||||| |
|
|
| T |
9377692 |
aatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaa |
9377593 |
T |
|
| Q |
116 |
caaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaag |
215 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||||||| ||||||||| ||||| | ||| | || ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
9377592 |
caaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag |
9377493 |
T |
|
| Q |
216 |
atctattcccacagcacgtccttc |
239 |
Q |
| |
|
|||||| ||||| ||||||||||| |
|
|
| T |
9377492 |
atctatacccactgcacgtccttc |
9377469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 9335184 - 9334962
Alignment:
| Q |
16 |
aatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaa |
115 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||| ||| || |||||||||||||||||||||| |||| |||||||||| || | | ||||||| |
|
|
| T |
9335184 |
aatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcacca-tcaacctttgctcattgttgaaagcaa |
9335086 |
T |
|
| Q |
116 |
caaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaag |
215 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||||||| ||||||||| ||||| | ||| | || ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
9335085 |
caaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag |
9334986 |
T |
|
| Q |
216 |
atctattcccacagcacgtccttc |
239 |
Q |
| |
|
|||||| ||||| ||||||||||| |
|
|
| T |
9334985 |
atctatacccactgcacgtccttc |
9334962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 30776067 - 30776294
Alignment:
| Q |
13 |
gagaatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaag |
112 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| || |||| | |||| || | |||||||||| ||| | |||||||||| | ||||| |||| |
|
|
| T |
30776067 |
gagaatagcaatagaaatttaccaaagacagtgttttgagggttgatagcagcctggtccttagcagcagcaccgaccaacctttgaccatcagtgaaag |
30776166 |
T |
|
| Q |
113 |
caacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttcc |
212 |
Q |
| |
|
|||||||||||||||| ||||| |||||| || |||| ||||| || |||||||| | | ||||||||| ||||| ||||| || || || ||||| |
|
|
| T |
30776167 |
caacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaacagccacacacgagtacgttgttcc |
30776266 |
T |
|
| Q |
213 |
aagatctattcccacagcacgtccttca |
240 |
Q |
| |
|
||| ||||| ||||| ||| |||||||| |
|
|
| T |
30776267 |
aaggtctatccccacggcatgtccttca |
30776294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 31 - 233
Target Start/End: Original strand, 35133422 - 35133624
Alignment:
| Q |
31 |
ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg |
130 |
Q |
| |
|
|||||||| |||||||||||| | |||| |||| ||||||||||||||||| ||| |||||||||||||| | ||| ||||||| | |||||||||||| |
|
|
| T |
35133422 |
ttaccaaatacagtgttttcaaaattggcagcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttg |
35133521 |
T |
|
| Q |
131 |
ttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagc |
230 |
Q |
| |
|
||||||||| ||| || |||| ||| || || |||| | ||| | || |||| || |||||||||||||| || ||||| || |||||||| | ||| |
|
|
| T |
35133522 |
ttttgttgctttgatcgttgtgaatgatttcgactcgatagtgttgttcttgccatactgcaacacatgaatacgttgttccgaggtctattccgatagc |
35133621 |
T |
|
| Q |
231 |
acg |
233 |
Q |
| |
|
||| |
|
|
| T |
35133622 |
acg |
35133624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 42554320 - 42554110
Alignment:
| Q |
32 |
taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt |
131 |
Q |
| |
|
|||||||||||||||||| | ||||||||| | ||||| ||||||||||| |||||||||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
42554320 |
taccaaagacagtgttttgggggttggtggcggtttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt |
42554221 |
T |
|
| Q |
132 |
tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagca |
231 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| ||||| || || | || |||||||| |||||| ||||| || |||||||| ||||||||||| ||| |
|
|
| T |
42554220 |
tttgttgccttgatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctattcccactgca |
42554121 |
T |
|
| Q |
232 |
cgtccttcata |
242 |
Q |
| |
|
||||||||||| |
|
|
| T |
42554120 |
cgtccttcata |
42554110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 28220906 - 28221122
Alignment:
| Q |
22 |
aatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaag |
121 |
Q |
| |
|
|||||| ||||||||||||| || |||| | |||| |||| | |||||| |||||||||| ||||||||||||| ||| || || ||||||||||||| |
|
|
| T |
28220906 |
aatagaaatttaccaaagacggtattttgggggttgttggccgtttgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaag |
28221005 |
T |
|
| Q |
122 |
aaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctat |
221 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||||||| || || ||||| | || |||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
28221006 |
aaggagttgttttgttgccttgatcattgtgaataatctcaaccctattgtgttcatcttgccacacagcaacacatgaatacgttgttccaagatctat |
28221105 |
T |
|
| Q |
222 |
tcccacagcacgtcctt |
238 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
28221106 |
tcccacagcacatcctt |
28221122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 66 - 241
Target Start/End: Complemental strand, 16656699 - 16656524
Alignment:
| Q |
66 |
ttgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccact |
165 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| | ||| |||||||||||||||||||||||| |||| || || ||||||| || ||||| || |
|
|
| T |
16656699 |
ttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgatctctgct |
16656600 |
T |
|
| Q |
166 |
ctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttcat |
241 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
16656599 |
ctgttgtgacggtccatccacacagcaacacatgaataagttgttccaaggtctattcccactgcacgtccttcat |
16656524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 12244540 - 12244329
Alignment:
| Q |
28 |
tatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtg |
127 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||| |||||| |||||||||| |||||| ||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
12244540 |
tatttaccaaagacagtgttttgagagttagcagcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtg |
12244441 |
T |
|
| Q |
128 |
ttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccac |
227 |
Q |
| |
|
||||| ||||||| || || |||| ||| || || || | ||| | ||| |||| || |||||||||||||| || || ||||| ||||||||||| |
|
|
| T |
12244440 |
ttgttctgttgccctgatcgttgtgaatgatttcaacacgagagtgttgttcctgccatactgcaacacatgaatacgttgtaccaaggtctattcccac |
12244341 |
T |
|
| Q |
228 |
agcacgtccttc |
239 |
Q |
| |
|
||||||||||| |
|
|
| T |
12244340 |
ggcacgtccttc |
12244329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 43626286 - 43626485
Alignment:
| Q |
29 |
atttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgt |
128 |
Q |
| |
|
|||||||||||||||||||||| | || || || || |||| ||||||||||| ||||||||||||||| || | ||| |||| ||||||||||||||| |
|
|
| T |
43626286 |
atttaccaaagacagtgttttcggggtcggaggtagcttgacccttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgt |
43626385 |
T |
|
| Q |
129 |
tgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccaca |
228 |
Q |
| |
|
||| |||| ||||| ||||||| |||||||| ||||| ||| | || ||||||||||||| ||| ||||| || |||||||| |||||||||||| |
|
|
| T |
43626386 |
agttctgtttccttggtcattgtggataatctctactcttctgttttcatcaagccacacagcaatacaagaatacgttgttccaaggtctattcccaca |
43626485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 12258047 - 12257918
Alignment:
| Q |
32 |
taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt |
131 |
Q |
| |
|
||||||||||||||| || || ||||| |||| ||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||||||| ||||| |
|
|
| T |
12258047 |
taccaaagacagtgtgttgagggttggcagcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgt |
12257948 |
T |
|
| Q |
132 |
tttgttgccttgttcattgtaaataatctc |
161 |
Q |
| |
|
| |||| ||||| || |||| ||| ||||| |
|
|
| T |
12257947 |
tctgtttccttgatcgttgtgaatgatctc |
12257918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 31 - 239
Target Start/End: Original strand, 12235766 - 12235974
Alignment:
| Q |
31 |
ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg |
130 |
Q |
| |
|
||||||||||| ||||||| | ||||| |||| ||||||||||||||||| |||||||||||| |||| || || ||||||||||||||||| |||| |
|
|
| T |
12235766 |
ttaccaaagacggtgttttgcgggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttg |
12235865 |
T |
|
| Q |
131 |
ttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagc |
230 |
Q |
| |
|
|| | |||||||| || |||| ||| ||||| |||| ||| | ||| |||| || |||||||||||||| || || ||||| ||||| |||||||| |
|
|
| T |
12235866 |
ttctattgccttgatcgttgtgaatgatctcaactcgagagtgctgttcctgccatactgcaacacatgaatatgttgtaccaaggtctatccccacagc |
12235965 |
T |
|
| Q |
231 |
acgtccttc |
239 |
Q |
| |
|
| ||||||| |
|
|
| T |
12235966 |
aagtccttc |
12235974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 32 - 239
Target Start/End: Original strand, 14705432 - 14705639
Alignment:
| Q |
32 |
taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt |
131 |
Q |
| |
|
||||||||||||||||| || ||||| |||| ||||||||||||||||| ||||||||||| |||| || || ||||||||||||||||| ||||| |
|
|
| T |
14705432 |
taccaaagacagtgtttcgagggttggcagcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgt |
14705531 |
T |
|
| Q |
132 |
tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagca |
231 |
Q |
| |
|
| | |||||||| || |||| ||| || || |||| | || | ||| |||| || ||||||||||| || || || ||||| ||||||||||||||| |
|
|
| T |
14705532 |
tctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagtacgttgtaccaaggtctattcccacagca |
14705631 |
T |
|
| Q |
232 |
cgtccttc |
239 |
Q |
| |
|
| |||||| |
|
|
| T |
14705632 |
catccttc |
14705639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 16661209 - 16661003
Alignment:
| Q |
22 |
aatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaag |
121 |
Q |
| |
|
|||||| || || ||||||| ||||||| | |||| | |||| ||||| |||||||||| ||| | |||||||||| | ||||||||||||||||||| |
|
|
| T |
16661209 |
aatagaaatatagcaaagacggtgttttgtgggttgatagcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaag |
16661110 |
T |
|
| Q |
122 |
aaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctat |
221 |
Q |
| |
|
||||||| |||||||||||| || |||| |||||||| |||||||| | | |||| ||| |||||||||||||| || || ||||| || ||||| |
|
|
| T |
16661109 |
aaggtgtaattttgttgccttcatcgttgtggataatctcaactctgtttttctcttccaaccaaacagcaacacatgagtatgttgttcctaggtctat |
16661010 |
T |
|
| Q |
222 |
tcccaca |
228 |
Q |
| |
|
|||||| |
|
|
| T |
16661009 |
gcccaca |
16661003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 7543245 - 7543357
Alignment:
| Q |
31 |
ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg |
130 |
Q |
| |
|
||||||||||||||||||| || ||||| |||| ||||||||||||| || ||| |||||||| |||| || || |||||||||||||||||||||| |
|
|
| T |
7543245 |
ttaccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttg |
7543344 |
T |
|
| Q |
131 |
ttttgttgccttg |
143 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
7543345 |
ttctgttgccttg |
7543357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 12000301 - 12000413
Alignment:
| Q |
31 |
ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg |
130 |
Q |
| |
|
|||||||| |||||||||| |||||||| || | ||| || |||||||||| ||||| |||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
12000301 |
ttaccaaaaacagtgttttgagagttggcagcggcttggtttttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaaggtgtta |
12000400 |
T |
|
| Q |
131 |
ttttgttgccttg |
143 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12000401 |
ttttgttgccttg |
12000413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 43745793 - 43745985
Alignment:
| Q |
32 |
taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt |
131 |
Q |
| |
|
||||||||| ||||||| || ||||||||| | ||||||||||||||| | ||| |||||||||| || ||||||||||||||||||||| ||||| |
|
|
| T |
43745793 |
taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaa---gttgt |
43745889 |
T |
|
| Q |
132 |
tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccac |
227 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| ||||| || || | || |||||||||||||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
43745890 |
tttgttgccttgatcattgtgaataatctcaactctattttgttcatcttgccacacagcaacacacgaatacgttgttccaaggtctattcccac |
43745985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 12529871 - 12529969
Alignment:
| Q |
66 |
ttgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccac |
164 |
Q |
| |
|
|||||| || ||||||| ||||||||| || ||| | ||||||||||||| ||||||||||||||||||| ||||| ||||||| ||| || ||||| |
|
|
| T |
12529871 |
ttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttccac |
12529969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 28911272 - 28911352
Alignment:
| Q |
21 |
aaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatc |
101 |
Q |
| |
|
||||||| || |||| || ||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
28911272 |
aaatagaaatatacctaaaacagtgttttcggggttggtggcagcctgattcttagcagcatcaccaatcaacctttgatc |
28911352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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