View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_40 (Length: 250)
Name: NF20456_low_40
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_40 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 38485706 - 38485457
Alignment:
| Q |
1 |
tcccatcttcattcccagttctgagctgctctttactgtaaaccacttcttcactataataaggggttagaacactgaaagccatcattttctcaacttg |
100 |
Q |
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| T |
38485706 |
tcccatcttcattcccagttctgagctgctctttactgtaaaccacttcttcactataataaggggttagaacactgaaagccatcattttctcaacttg |
38485607 |
T |
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| Q |
101 |
aggagcatggggcatcttcataaaaagtgagttactgaagaatgcaattcgccgtctagcttctagattaattggaatgttttgcattgaatccctggag |
200 |
Q |
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| T |
38485606 |
aggagcatggggcatcttcataaaaagtgagttactgaagaatgcaattctccgtctagcttctagattaattggaatgttttgcattgaatccctggag |
38485507 |
T |
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| Q |
201 |
gtaagaataatatgcaagcgtcgaatctgccgatagaagttctcgttcat |
250 |
Q |
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| T |
38485506 |
gtaagaatagtatgcaagcgtcgaatctgccgatagaagttctcgttcat |
38485457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 3684861 - 3684748
Alignment:
| Q |
56 |
ataataaggggttagaacactgaaagccatcattttctcaacttgaggagcatggggcatcttcataaaaagtgagttactgaagaatgcaattcgccgt |
155 |
Q |
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| T |
3684861 |
ataatacggggtcaaaacactgaaagccatcattttttcaacatagggagcacggggaatgttcataaacaaagaattgctaaagaaagcaatccgccgt |
3684762 |
T |
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| Q |
156 |
ctagcttctagatt |
169 |
Q |
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| T |
3684761 |
cgagcctcaagatt |
3684748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 30120091 - 30119853
Alignment:
| Q |
6 |
tcttcattcccagttctgagctgctctttactgtaaaccacttcttcactataataaggggttagaacactgaaagccatcattttctcaacttgaggag |
105 |
Q |
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||||||||| |||| |||||||| ||||| ||||| | ||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||| |||| |
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| T |
30120091 |
tcttcattctcagtcctgagctgttctttgctgtataatacttcttcattgtaataaggtgttagaacactgaaagccagcattttctcaacttggggag |
30119992 |
T |
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| Q |
106 |
catggggcatcttcataaaaagtgagttactgaagaatgcaattcgccgtctagcttctagattaattggaatgttttgcattgaatccctggaggtaag |
205 |
Q |
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| T |
30119991 |
catggggcatattcataaaaagtgagttgctgaagaaagcaatcctccgtctggcctctagatttataggaatgttttgcattgaatccctggaggtaag |
30119892 |
T |
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| Q |
206 |
aataatatgcaagcgtcgaatctgccgatagaagttctc |
244 |
Q |
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| T |
30119891 |
aattgtgtgcagacgccgaacctggcgatagaagttctc |
30119853 |
T |
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