View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_44 (Length: 241)
Name: NF20456_low_44
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_44 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 73536 - 73761
Alignment:
| Q |
1 |
ttaaccaatgtcccaagaacactctttagcatttcccctatttataaagatgagtatatggacaagctataagtcacttagcttacttcatttcatttgt |
100 |
Q |
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||||| ||||||| | | ||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
73536 |
ttaactaatgtcctatggacactctttagcatttccc-tacttataaagatgactatatggacaagctataagtcagttagcttacatcatttcatttgt |
73634 |
T |
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| Q |
101 |
ataataattgtttgatttgtattacaaatatattattcagacttaactcttagattggattttattgaaatccttgtag---aataataccagggtagta |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||| |
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| T |
73635 |
ataataattgtttgatttgtattacaaatatattattcagacttaactcttagattggattctaatgaaatccttgtagattaatactaccagggtagta |
73734 |
T |
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| Q |
198 |
agattgtacaagaacacgaggggtagg |
224 |
Q |
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||||||||||||||||||||||||||| |
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| T |
73735 |
agattgtacaagaacacgaggggtagg |
73761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 16441802 - 16441768
Alignment:
| Q |
1 |
ttaaccaatgtcccaagaacactctttagcatttc |
35 |
Q |
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||||||||||||| ||||||||||||||||||||| |
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| T |
16441802 |
ttaaccaatgtccaaagaacactctttagcatttc |
16441768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1947501 - 1947537
Alignment:
| Q |
1 |
ttaaccaatgtcccaagaacactctttagcatttccc |
37 |
Q |
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| T |
1947501 |
ttaaccaatgcctcaagaacactctttagcatttccc |
1947537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 35502045 - 35502078
Alignment:
| Q |
4 |
accaatgtcccaagaacactctttagcatttccc |
37 |
Q |
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| T |
35502045 |
accaatgtcccaagaacactctttatcatttccc |
35502078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7532881 - 7532917
Alignment:
| Q |
1 |
ttaaccaatgtcccaagaacactctttagcatttccc |
37 |
Q |
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|||||||||| || ||||||||||||||||||||||| |
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| T |
7532881 |
ttaaccaatgccctaagaacactctttagcatttccc |
7532917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39323500 - 39323536
Alignment:
| Q |
1 |
ttaaccaatgtcccaagaacactctttagcatttccc |
37 |
Q |
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||||||||||| | ||||||||||||||||||||||| |
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| T |
39323500 |
ttaaccaatgtactaagaacactctttagcatttccc |
39323536 |
T |
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