View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_50 (Length: 227)
Name: NF20456_low_50
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_50 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 40495371 - 40495151
Alignment:
| Q |
7 |
ccaccaataccaaaaggttactttggaaatgcaattgtgttgtcaaatgctatgtgtaaagcaagagagttgttgaataatccattatcattcagtgtgg |
106 |
Q |
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| T |
40495371 |
ccaccaataccaaaaggttactttggaaatgcaattgtgttgtcaaatgctatgtgtaaagcaagagagttgttgaagaatccattatcattcagtgtgg |
40495272 |
T |
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| Q |
107 |
aattgattaacaaagcaattgagatggtgacagatagttatatgagatctgttattgactattttgaagttaaaagaagtaagccaactttaacatcaac |
206 |
Q |
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| T |
40495271 |
aattgattaacaaagcaattgagatggtgacagatagttatatgagatctgttattgactattttgaagttaaaagaagtaagccaactttaacatcaac |
40495172 |
T |
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| Q |
207 |
acttttgatcacaacatggac |
227 |
Q |
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| T |
40495171 |
acttttgatcacaacatggac |
40495151 |
T |
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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 45350520 - 45350409
Alignment:
| Q |
116 |
acaaagcaattgagatggtgacagatagttatatgagatctgttattgactattttgaagttaaaagaagtaagccaactttaacatcaacacttttgat |
215 |
Q |
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|||| |||||||| ||||| |||||||||||||||||||||| |||||| ||||||||||||| |||| || ||| |||||||| ||||||||||| |
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| T |
45350520 |
acaaggcaattgatatggttacagatagttatatgagatctgctattgattattttgaagttacaagagctaggccttctttaacaggcacacttttgat |
45350421 |
T |
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| Q |
216 |
cacaacatggac |
227 |
Q |
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| T |
45350420 |
tacaacttggac |
45350409 |
T |
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