View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20456_low_6 (Length: 712)

Name: NF20456_low_6
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20456_low_6
NF20456_low_6
[»] chr3 (25 HSPs)
chr3 (201-693)||(27999714-28000220)
chr3 (418-669)||(28080794-28081045)
chr3 (373-686)||(11409821-11410143)
chr3 (488-694)||(27910978-27911184)
chr3 (449-694)||(28178979-28179224)
chr3 (521-693)||(28049158-28049330)
chr3 (416-669)||(27463009-27463262)
chr3 (463-691)||(27972753-27972981)
chr3 (4-149)||(27999357-27999501)
chr3 (441-627)||(28471189-28471375)
chr3 (441-627)||(28512235-28512421)
chr3 (488-595)||(17747610-17747714)
chr3 (488-595)||(19048930-19049034)
chr3 (441-529)||(28491328-28491416)
chr3 (463-614)||(26211318-26211469)
chr3 (490-546)||(18029697-18029753)
chr3 (481-670)||(27434099-27434288)
chr3 (414-456)||(28049081-28049123)
chr3 (68-107)||(11409601-11409640)
chr3 (202-245)||(50037311-50037354)
chr3 (213-247)||(20276052-20276086)
chr3 (201-243)||(46483249-46483291)
chr3 (212-245)||(20370309-20370342)
chr3 (490-551)||(26134177-26134238)
chr3 (202-247)||(53996297-53996342)
[»] chr4 (7 HSPs)
chr4 (31-107)||(9329313-9329386)
chr4 (31-107)||(9383096-9383169)
chr4 (202-245)||(36490568-36490611)
chr4 (202-247)||(16743302-16743347)
chr4 (202-247)||(19854563-19854608)
chr4 (212-245)||(39171398-39171431)
chr4 (212-245)||(43374300-43374333)
[»] scaffold0067 (1 HSPs)
scaffold0067 (492-669)||(24549-24726)
[»] chr7 (4 HSPs)
chr7 (202-245)||(31038540-31038583)
chr7 (201-245)||(35142166-35142210)
chr7 (202-245)||(41527560-41527603)
chr7 (212-243)||(44473338-44473369)
[»] chr1 (6 HSPs)
chr1 (202-245)||(16967212-16967255)
chr1 (202-247)||(32944734-32944779)
chr1 (203-245)||(43021647-43021689)
chr1 (202-247)||(8253737-8253782)
chr1 (202-247)||(13054871-13054916)
chr1 (212-245)||(29701348-29701381)
[»] scaffold0043 (1 HSPs)
scaffold0043 (490-550)||(70977-71034)
[»] chr8 (4 HSPs)
chr8 (202-245)||(10871912-10871955)
chr8 (202-245)||(27718912-27718955)
chr8 (202-247)||(30427729-30427774)
chr8 (212-245)||(44654994-44655027)
[»] chr5 (4 HSPs)
chr5 (202-245)||(24485699-24485742)
chr5 (202-245)||(39610359-39610402)
chr5 (202-247)||(10515359-10515404)
chr5 (212-245)||(22394035-22394068)
[»] chr2 (5 HSPs)
chr2 (202-245)||(33063986-33064029)
chr2 (212-245)||(9799438-9799471)
chr2 (202-247)||(29734689-29734734)
chr2 (212-245)||(41187485-41187518)
chr2 (212-245)||(41204529-41204562)
[»] scaffold1694 (1 HSPs)
scaffold1694 (202-240)||(160-198)
[»] scaffold0007 (1 HSPs)
scaffold0007 (212-245)||(244479-244512)
[»] chr6 (2 HSPs)
chr6 (212-245)||(16130765-16130798)
chr6 (212-249)||(24827048-24827085)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 201 - 693
Target Start/End: Original strand, 27999714 - 28000220
Alignment:
Q  201 tttgcatacaatatgcattgtccatatcaactaagctaagctcac-----------aatgtatagtttattagtataatatatcgagnnnnnnn---gtt 286  Q
    ||||||||||||| ||||| |||||| ||||| ||||||||||||           ||||||||||||| |||||||||||||||||          |||    
T  27999714 tttgcatacaatacgcattatccataccaactgagctaagctcacgaggacagaataatgtatagtttaatagtataatatatcgagttttttttttgtt 27999813  T
Q  287 ggtgattagtattataacaagtttaatactattttaagtatttaatagctttggttcatctttnnnnnnnnttagaatatataaaagaaaaatgctttgt 386  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| |||||    
T  27999814 ggtgattagtataataacaagtttaatagtattttaagtatttaatagctttggttcatctttaaaaataattagaatatataaaagaaaaatgatttgt 27999913  T
Q  387 ttgtattttcttgaattttatacacgcaaactaagaggttatttaacttatatttttatttggattacataattataggaatcagattcatactgtcttc 486  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  27999914 ttgtattttcttgaattttatacacgcaaactaacagattatttaacttatatttttatttggattacataattacaggaatcagattcatactgtctac 28000013  T
Q  487 ccatatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtatt 586  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  28000014 ccatatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattacactgaataatatttcgaagatgaaatcagtatt 28000113  T
Q  587 catcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaac 686  Q
    ||||||||| ||||||| |||||||||| ||||  | |||||||| |||||||||||||| |||||||| || ||||||||| | |  |||||| |||||    
T  28000114 catcctatctattgctccaagaatgttgttggaatcattgacaattagtaagtgtgatgaattgaagcatattataatagacgttgatgatcataacaac 28000213  T
Q  687 aatggtg 693  Q
    | |||||    
T  28000214 actggtg 28000220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 418 - 669
Target Start/End: Original strand, 28080794 - 28081045
Alignment:
Q  418 taagaggttatttaacttatatttttatttggattacataattataggaatcagattcatactgtcttcccatatgggaacgtgctcaatgtctttcaat 517  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| |||||||| | |||||    |||  |||||||||||||||||||| |||||||||    
T  28080794 taagagattatttaacttatatttttattttgattacataattacaggaatcaaagtcatatccccttaacatatgggaacgtgctcaatttctttcaat 28080893  T
Q  518 accatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattcatcctatccattgctcgaagaatgttgctg 617  Q
    ||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  28080894 accatcaaatatcttgtggaatattaaagagattacactgatgaatatttcgaagatgaaatcagtattcatcctatccattgctccaagaatgttgttg 28080993  T
Q  618 gagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagaca 669  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  28080994 gagactttgacaatcagtaagtgtgatgaattgaagcacattataatagaca 28081045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 373 - 686
Target Start/End: Original strand, 11409821 - 11410143
Alignment:
Q  373 gaaaaatgctttgtttgtattttcttgaattttatacacgcaaactaagaggttatttaacttatatttttatttggattacataattataggaatcaga 472  Q
    ||||| || |||||||| ||||||||||||||||||||| || |||||||  ||||||||||||||||||||||||||||||||| ||| |||||||| |    
T  11409821 gaaaagtgatttgtttgcattttcttgaattttatacactcatactaagatattatttaacttatatttttatttggattacatagttacaggaatcaaa 11409920  T
Q  473 ttcata----ctgtcttcc-----catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaat 563  Q
    ||||||    |||  || |     |||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  11409921 ttcatattccctggattacataagcatatgggaacgtgctcaatgtcttttaagaccatcagatatcttgtgcaatattaaagagattacactgaggaat 11410020  T
Q  564 atttcgaagatgaaatcagtattcatcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataa 663  Q
    |||| |||||||| ||| |||||||||||||| ||||||| || ||||||| |||| ||||||||||| || || |||||||| || |||||||| || |    
T  11410021 attttgaagatgagatcggtattcatcctatctattgctccaaaaatgttgttggaaactttgacaattaggaactgtgatgaattaaagcacattatta 11410120  T
Q  664 tagacatgggagatcatgacaac 686  Q
    ||||||  |||||||||||||||    
T  11410121 tagacaccggagatcatgacaac 11410143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 488 - 694
Target Start/End: Original strand, 27910978 - 27911184
Alignment:
Q  488 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 587  Q
    |||||||||||||| |||||||||||||| || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27910978 catatgggaacgtgttcaatgtctttcaagacaatcacatatcttatgcaatattaaagagattacactgaagaatatttcgaagatgaaatcagtattc 27911077  T
Q  588 atcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaaca 687  Q
    |||||||| ||||||| | |||||||| |||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| |  |||||||||||||    
T  27911078 atcctatcgattgctccaggaatgttgttggagactttgacaattagtaagtgtgacgaattgaagcacattataatagacattgatgatcatgacaaca 27911177  T
Q  688 atggtgg 694  Q
     ||||||    
T  27911178 ctggtgg 27911184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 449 - 694
Target Start/End: Original strand, 28178979 - 28179224
Alignment:
Q  449 gattacataattataggaatcagattcatactgtcttcccatatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagag 548  Q
    ||||| ||||||  |||||||| |||||||   ||||  |||||||||| |||||||||||||||||| || ||||||||||||||||||||||||| ||    
T  28178979 gattatataattgcaggaatcaaattcatatcctcttaacatatgggaaagtgctcaatgtctttcaagacaatcacatatcttgtgcaatattaaaaag 28179078  T
Q  549 attagactgaagaatatttcgaagatgaaatcagtattcatcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagt 648  Q
    |||| |||   ||| ||||| ||||||||||||||||| ||||| || ||||||| || ||||||| ||||| | |||||||||  ||||||| |||| |    
T  28179079 attacactctggaaaatttcaaagatgaaatcagtatttatcctgtctattgctccaacaatgttgttggagtcattgacaatctataagtgtaatgaat 28179178  T
Q  649 tgaagcacatcataatagacatgggagatcatgacaacaatggtgg 694  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||    
T  28179179 tgaagcacattataatagacatgggagatcatgacaacactggtgg 28179224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 521 - 693
Target Start/End: Original strand, 28049158 - 28049330
Alignment:
Q  521 atcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattcatcctatccattgctcgaagaatgttgctggag 620  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||| |||||    
T  28049158 atcacatatcttgtgcaatattaaagagattacactgaagaatatttcgaagatgaaatcagtattcatcctatctattgcttctagaatgttgttggag 28049257  T
Q  621 actttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaacaatggtg 693  Q
    || |||| ||| || ||||||||||| ||||||||||| ||||||||||| |  ||||||||||||| |||||    
T  28049258 accttgagaattagcaagtgtgatgaattgaagcacataataatagacattgatgatcatgacaacactggtg 28049330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 416 - 669
Target Start/End: Complemental strand, 27463262 - 27463009
Alignment:
Q  416 actaagaggttatttaacttatatttttatttggattacataattataggaatcagattcatactgtcttcccatatgggaacgtgctcaatgtctttca 515  Q
    |||||||| ||||||||||| |||||| |||||||||||||||||  |||||||| |||| || || |||  ||||||||||||||||||||||||||||    
T  27463262 actaagagattatttaacttctattttcatttggattacataattgcaggaatcaaattcctattgccttaacatatgggaacgtgctcaatgtctttca 27463163  T
Q  516 ataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattcatcctatccattgctcgaagaatgttgc 615  Q
    | || |||||||||| ||| |||||||||||||||||| |||    ||||||| ||||||||||| ||||| |||||||| | ||||| ||||||||||     
T  27463162 agacaatcacatatcctgtacaatattaaagagattaggctgggatatatttcaaagatgaaatctgtatttatcctatctactgctccaagaatgttgt 27463063  T
Q  616 tggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagaca 669  Q
    ||||||||||    || || || |||||||| ||||||||||| ||| ||||||    
T  27463062 tggagactttatgtattagcaactgtgatgaattgaagcacataatagtagaca 27463009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 463 - 691
Target Start/End: Original strand, 27972753 - 27972981
Alignment:
Q  463 aggaatcagattcatactgtcttcccatatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaa 562  Q
    |||||||| ||||||| |  |||  ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | |||   |    
T  27972753 aggaatcaaattcatattcccttaacatatgggaacgtgctcaatgtctttcaagacaatcacatatcttgtgcaatattaaagagattaaattgagaga 27972852  T
Q  563 tatttcgaagatgaaatcagtattcatcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcata 662  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||    || |  || |||||||| || ||| |||| |||    
T  27972853 tatttcgaagatgaaatccgtattcatcctatctattgctccaagaatgttgttggagactttatggattatcaattgtgatgaattaaagtacataata 27972952  T
Q  663 atagacatgggagatcatgacaacaatgg 691  Q
    |||||||  |  |||||||||||||||||    
T  27972953 atagacactgatgatcatgacaacaatgg 27972981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 27999357 - 27999501
Alignment:
Q  4 ttgaggaggagcacagatactaaagtttcattggtttctgaggatcaacagcaagacaacgcaataatggtaaccatctcaccttcttctgtaatgttat 103  Q
    |||||||| | |||| ||||||||||| |||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||||||||    
T  27999357 ttgaggagtaccacaaatactaaagttccattggtttctgaggatcaacaacaagagaacgtaataatggtaaccatctcaccttcttatgtaatgttat 27999456  T
Q  104 ttttataccnnnnnnnnncttctaactattgatacatttgattatt 149  Q
    |||||||||         |||| |||||||||||||||||||||||    
T  27999457 ttttatacc-tttttttccttcaaactattgatacatttgattatt 27999501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 441 - 627
Target Start/End: Complemental strand, 28471375 - 28471189
Alignment:
Q  441 tttatttggattacataattataggaatcagattcatactgtcttcccatatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaata 540  Q
    ||||||||||||||||||||  |||||||| |||||||    |||  ||||||||||||||||||||||||||||| || |||||||||||||||||||     
T  28471375 tttatttggattacataattgcaggaatcaaattcatatccccttaacatatgggaacgtgctcaatgtctttcaagacaatcacatatcttgtgcaatg 28471276  T
Q  541 ttaaagagattagactgaagaatatttcgaagatgaaatcagtattcatcctatccattgctcgaagaatgttgctggagactttga 627  Q
    ||| |||||||| | |||  ||| | || |||||||||||  |||| | |||||| | ||||| |||||||||  |||| |||||||    
T  28471275 ttacagagattacattgagcaatgtctcaaagatgaaatcgttatttaacctatctactgctccaagaatgttattggaaactttga 28471189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 441 - 627
Target Start/End: Complemental strand, 28512421 - 28512235
Alignment:
Q  441 tttatttggattacataattataggaatcagattcatactgtcttcccatatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaata 540  Q
    ||||||||||||||||||||  |||||||| |||||||    |||  ||||||||||||||||||||||||||||| || |||||||||||||||||||     
T  28512421 tttatttggattacataattgcaggaatcaaattcatatccccttaacatatgggaacgtgctcaatgtctttcaagacaatcacatatcttgtgcaatg 28512322  T
Q  541 ttaaagagattagactgaagaatatttcgaagatgaaatcagtattcatcctatccattgctcgaagaatgttgctggagactttga 627  Q
    ||| |||||||| | |||  ||| | || |||||||||||  |||| | |||||| | ||||| |||||||||  |||| |||||||    
T  28512321 ttacagagattacattgagcaatgtctcaaagatgaaatcgttatttaacctatctactgctccaagaatgttattggaaactttga 28512235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 488 - 595
Target Start/End: Complemental strand, 17747714 - 17747610
Alignment:
Q  488 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 587  Q
    ||||||||||||||||||||||||||||| |||| |||   ||||||||||| || ||||||||| | |||||||| |||| ||||||||||| |||||     
T  17747714 catatgggaacgtgctcaatgtctttcaagaccagcac---tcttgtgcaatgttgaagagattacattgaagaatgtttcaaagatgaaatcggtattt 17747618  T
Q  588 atcctatc 595  Q
    ||||||||    
T  17747617 atcctatc 17747610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 488 - 595
Target Start/End: Complemental strand, 19049034 - 19048930
Alignment:
Q  488 catatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattc 587  Q
    ||||||||||||||||||||||||||||| |||| |||   ||||||||||| || ||||||||| | |||||||| |||| ||||||||||| |||||     
T  19049034 catatgggaacgtgctcaatgtctttcaagaccagcac---tcttgtgcaatgttgaagagattacattgaagaatgtttcaaagatgaaatcggtattt 19048938  T
Q  588 atcctatc 595  Q
    ||||||||    
T  19048937 atcctatc 19048930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 441 - 529
Target Start/End: Complemental strand, 28491416 - 28491328
Alignment:
Q  441 tttatttggattacataattataggaatcagattcatactgtcttcccatatgggaacgtgctcaatgtctttcaataccatcacatat 529  Q
    ||||||||||||||||||||  |||||||| |||||||    |||  ||||||||||||||||||||||||||||| || |||||||||    
T  28491416 tttatttggattacataattgcaggaatcaaattcatatccccttaacatatgggaacgtgctcaatgtctttcaagacaatcacatat 28491328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 614
Target Start/End: Complemental strand, 26211469 - 26211318
Alignment:
Q  463 aggaatcagattcatactgtcttcccatatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaa 562  Q
    |||||||| ||||| | || |||  |||||||||||||||||||||||||  || || |||||||||| ||||||||| ||||||||||  | |    ||    
T  26211469 aggaatcaaattcacattgccttgacatatgggaacgtgctcaatgtcttctaagacaatcacatatcctgtgcaatactaaagagattgaaatctgtaa 26211370  T
Q  563 tatttcgaagatgaaatcagtattcatcctatccattgctcgaagaatgttg 614  Q
    | || ||||||| ||||| ||||| |||| ||| ||||||| ||||||||||    
T  26211369 ttttccgaagattaaatctgtatttatccaatctattgctccaagaatgttg 26211318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 490 - 546
Target Start/End: Complemental strand, 18029753 - 18029697
Alignment:
Q  490 tatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaag 546  Q
    ||||||||||||||||||||||||||| || |||||||||| ||||||| |||||||    
T  18029753 tatgggaacgtgctcaatgtctttcaagactatcacatatcatgtgcaaaattaaag 18029697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 481 - 670
Target Start/End: Complemental strand, 27434288 - 27434099
Alignment:
Q  481 gtcttcccatatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatc 580  Q
    |||||| ||||||||||  || || ||||||| |||||| |||| ||| |||||||||| ||||||||||||  |||    || ||| |  ||| || ||    
T  27434288 gtcttctcatatgggaatatgttccatgtcttccaatacaatcatatagcttgtgcaatgttaaagagattaatctgtctcattttttggcgataaagtc 27434189  T
Q  581 agtattcatcctatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacat 670  Q
     || || || ||||| ||| | | |||||||||| |||| ||||||||||| |  || ||||||||||||||| |||| |||||||||||    
T  27434188 ggtgtttattctatctattacaccaagaatgttgttggaaactttgacaattaagaactgtgatgagttgaagaacataataatagacat 27434099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 28049081 - 28049123
Alignment:
Q  414 aaactaagaggttatttaacttatatttttatttggattacat 456  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  28049081 aaactaagagattatttaacttatatttttatttggatgacat 28049123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 11409601 - 11409640
Alignment:
Q  68 taatggtaaccatctcaccttcttctgtaatgttattttt 107  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  11409601 taatggtaaccctctcaccttcttctgtgatgttattttt 11409640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 50037354 - 50037311
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||||| ||||||||||||||| ||||| ||||||||||||    
T  50037354 ttgcatacattatgcattgtccataccaactgagctaagctcac 50037311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 20276086 - 20276052
Alignment:
Q  213 atgcattgtccatatcaactaagctaagctcacaa 247  Q
    ||||||||||||||||||||||||||| |||||||    
T  20276086 atgcattgtccatatcaactaagctaaactcacaa 20276052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 46483291 - 46483249
Alignment:
Q  201 tttgcatacaatatgcattgtccatatcaactaagctaagctc 243  Q
    |||||||| | ||||||||||||||| ||||||||||||||||    
T  46483291 tttgcatatattatgcattgtccataccaactaagctaagctc 46483249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 20370309 - 20370342
Alignment:
Q  212 tatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||||||||||||||||| ||||||||||||    
T  20370309 tatgcattgtccatatcaactgagctaagctcac 20370342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 551
Target Start/End: Complemental strand, 26134238 - 26134177
Alignment:
Q  490 tatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagatt 551  Q
    ||||||||||| || ||||| ||| || ||  ||||||||| ||||||||||||||||||||    
T  26134238 tatgggaacgtcctgaatgtgttttaagacagtcacatatcatgtgcaatattaaagagatt 26134177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 53996342 - 53996297
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 247  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  53996342 ttgcatatattatgcattgtccataccaactgagctaagctcacaa 53996297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 9329386 - 9329313
Alignment:
Q  31 tcattggtttctgaggatcaacagcaagacaacgcaataatggtaaccatctcaccttcttctgtaatgttattttt 107  Q
    |||||||||||||||||||||| ||| ||||||   |||||||||||| ||| |||||||||||| |||||||||||    
T  9329386 tcattggtttctgaggatcaaccgcaggacaac---ataatggtaaccctcttaccttcttctgtgatgttattttt 9329313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 9383169 - 9383096
Alignment:
Q  31 tcattggtttctgaggatcaacagcaagacaacgcaataatggtaaccatctcaccttcttctgtaatgttattttt 107  Q
    |||||||||||||||||||||| ||| ||||||   |||||||||||| ||| |||||||||||| |||||||||||    
T  9383169 tcattggtttctgaggatcaaccgcaggacaac---ataatggtaaccctcttaccttcttctgtgatgttattttt 9383096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 36490611 - 36490568
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||    
T  36490611 ttgcatacattatgcattgtccataccaactaagttaagctcac 36490568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 16743302 - 16743347
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 247  Q
    ||||||| | |||||||| |||||||||||| ||||||||||||||    
T  16743302 ttgcatatattatgcattatccatatcaactgagctaagctcacaa 16743347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 19854608 - 19854563
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 247  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  19854608 ttgcatatattatgcattgtccataccaactgagctaagctcacaa 19854563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 39171398 - 39171431
Alignment:
Q  212 tatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||||||||||||||||| ||||||||||||    
T  39171398 tatgcattgtccatatcaactgagctaagctcac 39171431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 43374300 - 43374333
Alignment:
Q  212 tatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||||||||||||||||| ||||||||||||    
T  43374300 tatgcattgtccatatcaactgagctaagctcac 43374333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 492 - 669
Target Start/End: Original strand, 24549 - 24726
Alignment:
Q  492 tgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattagactgaagaatatttcgaagatgaaatcagtattcatcc 591  Q
    |||||||||| |||||||||| |||||| |||| | |   ||||||||||||||||||||  | ||    |||||| |||||| |||||||| || ||||    
T  24549 tgggaacgtgttcaatgtcttccaatacaatcatacagaatgtgcaatattaaagagattgtattgtgtcatattttgaagataaaatcagtgtttatcc 24648  T
Q  592 tatccattgctcgaagaatgttgctggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagaca 669  Q
    |||| ||| | | || ||||||| |||| ||||||||||| |  || ||||||||||| ||| |||| ||| ||||||    
T  24649 tatcaattacaccaaaaatgttgttggaaactttgacaattaagaactgtgatgagttaaagaacataatattagaca 24726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 31038540 - 31038583
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||    
T  31038540 ttgcatacaatatgcattgtccataccaactgagctaagctcac 31038583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 35142166 - 35142210
Alignment:
Q  201 tttgcatacaatatgcattgtccatatcaactaagctaagctcac 245  Q
    |||||||| | ||||||||||||||||||||| ||||||||||||    
T  35142166 tttgcatatattatgcattgtccatatcaactgagctaagctcac 35142210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 41527603 - 41527560
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||    
T  41527603 ttgcatatattatgcattgtccataccaactaagctaagctcac 41527560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 243
Target Start/End: Original strand, 44473338 - 44473369
Alignment:
Q  212 tatgcattgtccatatcaactaagctaagctc 243  Q
    ||||||||||||||||||||||||||||||||    
T  44473338 tatgcattgtccatatcaactaagctaagctc 44473369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 16967212 - 16967255
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  16967212 ttgcatatattatgcattgtccatatcaactaagctaagctcac 16967255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 32944779 - 32944734
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 247  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||||    
T  32944779 ttgcatatattatgcattgtccataccaactaagctaagctcacaa 32944734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 43021647 - 43021689
Alignment:
Q  203 tgcatacaatatgcattgtccatatcaactaagctaagctcac 245  Q
    |||||| |||||||||||||| || ||||||||||||||||||    
T  43021647 tgcataaaatatgcattgtccctaccaactaagctaagctcac 43021689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 8253782 - 8253737
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 247  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  8253782 ttgcatatattatgcattgtccataccaactgagctaagctcacaa 8253737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 13054916 - 13054871
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 247  Q
    ||||||| | |||||||||||| || ||||||||||||||||||||    
T  13054916 ttgcatatattatgcattgtccctaccaactaagctaagctcacaa 13054871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 29701348 - 29701381
Alignment:
Q  212 tatgcattgtccatatcaactaagctaagctcac 245  Q
    |||||||||||||||||||||||| |||||||||    
T  29701348 tatgcattgtccatatcaactaagttaagctcac 29701381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 490 - 550
Target Start/End: Complemental strand, 71034 - 70977
Alignment:
Q  490 tatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagat 550  Q
    |||||||||||||||||||||||||||    |||||||||| |||||||||||||| ||||    
T  71034 tatgggaacgtgctcaatgtctttcaa---aatcacatatcatgtgcaatattaaaaagat 70977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 10871912 - 10871955
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||    
T  10871912 ttgcatacattatgcattgtccataccaactaaactaagctcac 10871955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 27718912 - 27718955
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  27718912 ttgcatatattatgcattgtccatatcaactgagctaagctcac 27718955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 30427774 - 30427729
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 247  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  30427774 ttgcatatattatgcattgtccataccaactgagctaagctcacaa 30427729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 44655027 - 44654994
Alignment:
Q  212 tatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||||||| ||||||||||||||||||||||    
T  44655027 tatgcattgtctatatcaactaagctaagctcac 44654994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 24485742 - 24485699
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||    
T  24485742 ttgcatatattatgcattgtccataccaactaagctaagctcac 24485699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 39610359 - 39610402
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  39610359 ttgcatatattatgcattgtccatatcaactgagctaagctcac 39610402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 10515404 - 10515359
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 247  Q
    ||||||| | ||| |||||||||||||||||||| |||||||||||    
T  10515404 ttgcatatattattcattgtccatatcaactaagttaagctcacaa 10515359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 22394068 - 22394035
Alignment:
Q  212 tatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||||||||||||||||| ||||||||||||    
T  22394068 tatgcattgtccatatcaactgagctaagctcac 22394035  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 33064029 - 33063986
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  33064029 ttgcatatattatgcattgtccatatcaactgagctaagctcac 33063986  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 9799438 - 9799471
Alignment:
Q  212 tatgcattgtccatatcaactaagctaagctcac 245  Q
    |||||||||||||| |||||||||||||||||||    
T  9799438 tatgcattgtccatttcaactaagctaagctcac 9799471  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 29734734 - 29734689
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 247  Q
    ||||||| | ||||||||||||||||||||| |||||| |||||||    
T  29734734 ttgcatatattatgcattgtccatatcaactgagctaaactcacaa 29734689  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 41187485 - 41187518
Alignment:
Q  212 tatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||||||||||| ||||||||||||||||||    
T  41187485 tatgcattgtccataccaactaagctaagctcac 41187518  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 41204529 - 41204562
Alignment:
Q  212 tatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||||||||||| ||||||||||||||||||    
T  41204529 tatgcattgtccataccaactaagctaagctcac 41204562  T

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Target: scaffold1694 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 198 - 160
Alignment:
Q  202 ttgcatacaatatgcattgtccatatcaactaagctaag 240  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  198 ttgcatacattatgcattgtccatatcaactgagctaag 160  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 244512 - 244479
Alignment:
Q  212 tatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||||||||||||||||| ||||||||||||    
T  244512 tatgcattgtccatatcaactgagctaagctcac 244479  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 16130798 - 16130765
Alignment:
Q  212 tatgcattgtccatatcaactaagctaagctcac 245  Q
    ||||||||||||||| ||||||||||||||||||    
T  16130798 tatgcattgtccataccaactaagctaagctcac 16130765  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 24827085 - 24827048
Alignment:
Q  212 tatgcattgtccatatcaactaagctaagctcacaatg 249  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  24827085 tatgcattgtccatatcaactgagctaagctaacaatg 24827048  T

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