View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20456_low_7 (Length: 572)
Name: NF20456_low_7
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20456_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Original strand, 44646562 - 44647116
Alignment:
| Q |
1 |
aggaatgtctaagcagcttaaagaatcattcaaaatgtccagttactgcatggtgggaaagcagcatagcgaatcttttctaaagaattatgtagctgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646562 |
aggaatgtctaagcagcttaaagaatcattcaaaatgtccagttactgcatgatgggaaagcagcatagcgaatcttttctaaagaattatgtagctgag |
44646661 |
T |
|
| Q |
101 |
aggaaaatagaaccattaacgaggcgacttctaggatgggcgagtgtgacatataactcactgtggacgagtgaaattgaggtgaccaagtcacactaat |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44646662 |
aggaaaatagaaccattaacgaggcggcttctaggatgggcgagtgtgacatataactcactgtggacgagtgaaattgaggtgaccaaatcacactaat |
44646761 |
T |
|
| Q |
201 |
tctgattatattaatgaatactaatcctagttcaaaatcacactagaatagtatatatatatggttcttttccaaaacttaatcgtttgctttatatctt |
300 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44646762 |
tctgattatattaatgaatcctaatccttgttcaaaatcacactagaatag--tatatatatggttctgttccaaaacttaatcgtttgctttatatctt |
44646859 |
T |
|
| Q |
301 |
ttttctttctacgatacattcaaattagaaatgattaannnnnnnaattagctatgaataatatttaggtaaaatatgagtatagtattttgaaaaagaa |
400 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646860 |
ttttctttctacgatgcattcaaattagaaatgattaatttttttaattagctatgaataatatttaggtaaaatatgagtatagtattttgaaaaagaa |
44646959 |
T |
|
| Q |
401 |
acttggataagagaatgggcctaaaacaagagcgggttttattcacaac--gttgaatccaccttctttataaattatctgcgaaattgctctttagcac |
498 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646960 |
acttggatacgagaatgggcctaaaacaagagcgggttttattcacaacttgttgaatccaccttctttataaattatctgcgaaattgctctttagcac |
44647059 |
T |
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| Q |
499 |
ctttgaaattgttcttttttgtaaataccgtatggctgaacggtactaatgtgttgt |
555 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
44647060 |
ctttgaaattgttcttttttgcaaataccgtttggctgaacggtactaatgtgttgt |
44647116 |
T |
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