View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20456_low_8 (Length: 571)

Name: NF20456_low_8
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20456_low_8
NF20456_low_8
[»] chr6 (9 HSPs)
chr6 (292-535)||(14203090-14203334)
chr6 (108-182)||(14203537-14203611)
chr6 (323-428)||(14175284-14175389)
chr6 (323-428)||(14179820-14179925)
chr6 (243-291)||(14203399-14203447)
chr6 (297-384)||(14184016-14184103)
chr6 (213-291)||(14183199-14183277)
chr6 (108-182)||(21051252-21051326)
chr6 (108-182)||(21074473-21074547)
[»] chr4 (1 HSPs)
chr4 (238-290)||(38878419-38878471)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 292 - 535
Target Start/End: Complemental strand, 14203334 - 14203090
Alignment:
Q  292 gatatcaatgtttcaatcatagtcactagtttaagcttcaacaatccatggatttcaacatctattgagcctttattgcaatcattaacacttagagtaa 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||| ||||||    
T  14203334 gatatcaatgtttcaatcatagtcactagtttaagcttcaacaatccaagtatttaagcatctattgagcctttattgcaatcattaacactttgagtaa 14203235  T
Q  392 agaaaataattcctattatcaagtttcttcggaacctatactcaatcttaagataaaactcgtgtaatggaggatttgataaaaactttttgac-acaac 490  Q
     |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||| |||||    
T  14203234 tgaaaataattcctattatcaagtttcttcggaacatatactcaatcttaagataaaacttgtgcaatggaggatttcataaaaacgttttgactacaac 14203135  T
Q  491 tagttcctacaccttatttgttttctcattgattagtaaaatttg 535  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  14203134 ttgttcctacaccttatttgttttctcattgattagtaaaatttg 14203090  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 14203611 - 14203537
Alignment:
Q  108 gagccaccaatggaagaaacattggaagagaataaggaagaggagttgaaaggagttaaagttttagaagagcag 182  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  14203611 gagccacctatggaagaaacattggaagagaatgaggaagaggagttaaaaggagttaaagttttagaagagcag 14203537  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 323 - 428
Target Start/End: Complemental strand, 14175389 - 14175284
Alignment:
Q  323 taagcttcaacaatccatggatttcaacatctattgagcctttattgcaatcattaacacttagagtaaagaaaataattcctattatcaagtttcttcg 422  Q
    ||||||| ||||||| | |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| |||| ||| ||||||  |||||||    
T  14175389 taagctttaacaatctaaggatttcaacatctatagagcctttcttgcaatcattaccacttagagtaaagaaaacaatttctactatcaaaattcttcg 14175290  T
Q  423 gaacct 428  Q
    ||||||    
T  14175289 gaacct 14175284  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 323 - 428
Target Start/End: Complemental strand, 14179925 - 14179820
Alignment:
Q  323 taagcttcaacaatccatggatttcaacatctattgagcctttattgcaatcattaacacttagagtaaagaaaataattcctattatcaagtttcttcg 422  Q
    ||||||| ||||||| | |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| |||| ||| ||||||  |||||||    
T  14179925 taagctttaacaatctaaggatttcaacatctatagagcctttcttgcaatcattaccacttagagtaaagaaaacaatttctactatcaaaattcttcg 14179826  T
Q  423 gaacct 428  Q
    ||||||    
T  14179825 gaacct 14179820  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 14203447 - 14203399
Alignment:
Q  243 tacaaatcaaccgtgtatcgtaaaaggtaaccattagttcactcttttc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14203447 tacaaatcaaccgtgtatcgtaaaaggtaaccattagttcactcttttc 14203399  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 297 - 384
Target Start/End: Complemental strand, 14184103 - 14184016
Alignment:
Q  297 caatgtttcaatcatagtcactagtttaagcttcaacaatccatggatttcaacatctattgagcctttattgcaatcattaacactt 384  Q
    |||||| |||||| ||  || |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| | |||||||    
T  14184103 caatgtgtcaatcttaagcattagtgtaagcttcaacaatccaaggatttcaacatctatagagcctttattgcaatcttcaacactt 14184016  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 291
Target Start/End: Complemental strand, 14183277 - 14183199
Alignment:
Q  213 tatacaatatggttgttcatgttacggtattacaaatcaaccgtgtatcgtaaaaggtaaccattagttcactcttttc 291  Q
    |||||||||||||||||| |||||  |||||| |||||||||||| ||| |||||||||||||| ||||||||| ||||    
T  14183277 tatacaatatggttgttcctgttaatgtattataaatcaaccgtggatcctaaaaggtaaccatcagttcactcatttc 14183199  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 21051252 - 21051326
Alignment:
Q  108 gagccaccaatggaagaaacattggaagagaataaggaagaggagttgaaaggagttaaagttttagaagagcag 182  Q
    |||||||||||||||||||||||||||||| || ||||||||| |  | ||||||  ||||| ||||||||||||    
T  21051252 gagccaccaatggaagaaacattggaagagcatgaggaagagggggcggaaggagagaaagtgttagaagagcag 21051326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 21074473 - 21074547
Alignment:
Q  108 gagccaccaatggaagaaacattggaagagaataaggaagaggagttgaaaggagttaaagttttagaagagcag 182  Q
    |||||||||||||||||||||| ||||||| || ||||||||| |  | ||||||  ||||| ||||||||||||    
T  21074473 gagccaccaatggaagaaacatgggaagagcatgaggaagagggggcggaaggagagaaagtgttagaagagcag 21074547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 38878471 - 38878419
Alignment:
Q  238 ggtattacaaatcaaccgtgtatcgtaaaaggtaaccattagttcactctttt 290  Q
    |||||||  |||||| |||  ||||||| ||||||||||||||||||||||||    
T  38878471 ggtattatgaatcaatcgtcgatcgtaacaggtaaccattagttcactctttt 38878419  T

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