View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20456_low_9 (Length: 568)

Name: NF20456_low_9
Description: NF20456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20456_low_9
NF20456_low_9
[»] chr1 (6 HSPs)
chr1 (16-293)||(47567409-47567686)
chr1 (349-549)||(47567742-47567942)
chr1 (13-111)||(47574288-47574389)
chr1 (13-111)||(47584005-47584106)
chr1 (429-463)||(40179887-40179921)
chr1 (429-465)||(27542693-27542729)
[»] chr8 (2 HSPs)
chr8 (49-111)||(10401928-10401990)
chr8 (425-463)||(16850678-16850716)
[»] chr6 (9 HSPs)
chr6 (55-111)||(20236382-20236438)
chr6 (55-111)||(22130366-22130422)
chr6 (55-111)||(22206567-22206623)
chr6 (53-111)||(21968553-21968611)
chr6 (58-111)||(18979959-18980012)
chr6 (58-111)||(20084255-20084308)
chr6 (55-111)||(20232973-20233029)
chr6 (55-111)||(22126957-22127013)
chr6 (53-111)||(22086446-22086504)
[»] chr2 (1 HSPs)
chr2 (424-464)||(4931603-4931643)
[»] chr4 (1 HSPs)
chr4 (424-463)||(1048167-1048206)
[»] chr5 (1 HSPs)
chr5 (426-463)||(29037065-29037102)
[»] scaffold0074 (1 HSPs)
scaffold0074 (55-111)||(49342-49398)
[»] scaffold0007 (1 HSPs)
scaffold0007 (55-111)||(6888-6944)
[»] chr7 (1 HSPs)
chr7 (428-464)||(32910657-32910693)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 47567409 - 47567686
Alignment:
Q  16 agacatctagtgagattactaggatattatttggaagatgagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttatttctca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567409 agacatctagtgagattactaggatattatttggaagatgagaagatacttatctatgagtatgtgccaaacaagagtcttgattactttttatttctca 47567508  T
Q  116 acataccctcacattattctttaatcatattaccacagtttctctgcatatataaattacccaccactaccttactgtaactgttcaacttcaagcaaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567509 acataccctcacattattctttaatcatattaccacagtttctctgcatatataaattacccaccactaccttactgtaactgttcaacttcaagcaaca 47567608  T
Q  216 acactaattatgattactcaccaaacaacacatacaataccaaccttaaaactcttttgtcatggctttcctccattt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567609 acactaattatgattactcaccaaacaacacatacaataccaaccttaaaactcttttgtcatggctttcctccattt 47567686  T

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Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 349 - 549
Target Start/End: Original strand, 47567742 - 47567942
Alignment:
Q  349 tatctttggcctcttcatgtgccacgtccaaattggaccaagcacagttttcgtttttacgtatatttaaaaacgtttgaatcaaatacatttgactttt 448  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567742 tatctttggcctcttcatgtgccaagtccaaattggaccaagcacagttttcgtttttacgtatatttaaaaacgtttgaatcaaatacatttgactttt 47567841  T
Q  449 tgcttatatttaagattggcatgagtagtgaattaactaatggttcatcttactttacagggtgtacataccaattgggatgagatgaagaggcatttgg 548  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47567842 tgcttatatttaagattggcatgagtagtgaattaactaatggttcatcttactttacagggtgtacataccaattgggatgagatgaagaggcttttgg 47567941  T
Q  549 g 549  Q
    |    
T  47567942 g 47567942  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 47574288 - 47574389
Alignment:
Q  13 cacagacatctagtgagattactaggatattatttggaagatgag---aaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttat 109  Q
    |||||| ||||||| ||||||||||||| || |||||||||||||   || ||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  47574288 cacagaaatctagtaagattactaggattttgtttggaagatgaggagaagatactaatctttgagtatgtgccaaacaagagtcttgattactttttat 47574387  T
Q  110 tt 111  Q
    ||    
T  47574388 tt 47574389  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 47584005 - 47584106
Alignment:
Q  13 cacagacatctagtgagattactaggatattatttggaagatga---gaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttat 109  Q
    |||||| ||||||||||||||||||||| || ||||||||||||   ||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||    
T  47584005 cacagaaatctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctat 47584104  T
Q  110 tt 111  Q
    ||    
T  47584105 tt 47584106  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 463
Target Start/End: Original strand, 40179887 - 40179921
Alignment:
Q  429 atcaaatacatttgactttttgcttatatttaaga 463  Q
    |||||||||||||||||||||||||||||||||||    
T  40179887 atcaaatacatttgactttttgcttatatttaaga 40179921  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 27542693 - 27542729
Alignment:
Q  429 atcaaatacatttgactttttgcttatatttaagatt 465  Q
    |||||||||||||||||||||  ||||||||||||||    
T  27542693 atcaaatacatttgactttttatttatatttaagatt 27542729  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 10401990 - 10401928
Alignment:
Q  49 gaagatgagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 111  Q
    ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||    
T  10401990 gaagaggagaaaatacttatatatgaatatgtgccgaacaagagtcttgatcactttttattt 10401928  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 463
Target Start/End: Original strand, 16850678 - 16850716
Alignment:
Q  425 ttgaatcaaatacatttgactttttgcttatatttaaga 463  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  16850678 ttgaaccaaatacatttgactttttgcttatatttaaga 16850716  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 20236438 - 20236382
Alignment:
Q  55 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 111  Q
    |||||||||||||| ||||| | |||||| ||||||||||||||||||||| |||||    
T  20236438 gagaaaatacttatttatgaatttgtgcccaacaagagtcttgattactttctattt 20236382  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 22130422 - 22130366
Alignment:
Q  55 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 111  Q
    |||||||||||||| ||||| | |||||| ||||||||||||||||||||| |||||    
T  22130422 gagaaaatacttatttatgaatttgtgcccaacaagagtcttgattactttctattt 22130366  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 22206567 - 22206623
Alignment:
Q  55 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 111  Q
    |||||||||||||| ||||| | |||||| ||||||||||||||||||||| |||||    
T  22206567 gagaaaatacttatttatgaatttgtgcccaacaagagtcttgattactttctattt 22206623  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 21968611 - 21968553
Alignment:
Q  53 atgagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 111  Q
    ||||||| |||||||| ||||| |||||  | |||||||||||||||||||||||||||    
T  21968611 atgagaagatacttatttatgaatatgtttccaacaagagtcttgattactttttattt 21968553  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 18980012 - 18979959
Alignment:
Q  58 aaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 111  Q
    ||||||||||| ||||| |||||||||||||| |||||||||| |||| |||||    
T  18980012 aaaatacttatttatgaatatgtgccaaacaaaagtcttgatttctttctattt 18979959  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 20084308 - 20084255
Alignment:
Q  58 aaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 111  Q
    ||||||||||| ||||| |||||||||||||| |||||||||| |||| |||||    
T  20084308 aaaatacttatttatgaatatgtgccaaacaaaagtcttgatttctttctattt 20084255  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 20232973 - 20233029
Alignment:
Q  55 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 111  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||| | |||||||||    
T  20232973 gagaaaatacttatttatgaatatgtgccaaacaagggacttgatcagtttttattt 20233029  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 22126957 - 22127013
Alignment:
Q  55 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 111  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||| | |||||||||    
T  22126957 gagaaaatacttatttatgaatatgtgccaaacaagggacttgatcagtttttattt 22127013  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 22086504 - 22086446
Alignment:
Q  53 atgagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 111  Q
    ||||||| |||||||| ||||| |||||  | ||||| |||||||||||||||||||||    
T  22086504 atgagaagatacttatttatgaatatgtttccaacaaaagtcttgattactttttattt 22086446  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 4931603 - 4931643
Alignment:
Q  424 tttgaatcaaatacatttgactttttgcttatatttaagat 464  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  4931603 tttgaatcaaatacatttgactttttgtttatatttaagat 4931643  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 463
Target Start/End: Complemental strand, 1048206 - 1048167
Alignment:
Q  424 tttgaatcaaatacatttgactttttgcttatatttaaga 463  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  1048206 tttgaatcaaatgcaattgactttttgcttatatttaaga 1048167  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 463
Target Start/End: Complemental strand, 29037102 - 29037065
Alignment:
Q  426 tgaatcaaatacatttgactttttgcttatatttaaga 463  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  29037102 tgaaccaaatacatttgactttttgcttatacttaaga 29037065  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 49342 - 49398
Alignment:
Q  55 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 111  Q
    |||||||||||||| ||||| | |||||| ||||| |||||||||| |||| |||||    
T  49342 gagaaaatacttatttatgaatttgtgcccaacaaaagtcttgatttctttctattt 49398  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 6888 - 6944
Alignment:
Q  55 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 111  Q
    |||||||||||||| ||||| | |||||| ||||| |||||||||| |||| |||||    
T  6888 gagaaaatacttatttatgaatttgtgcccaacaaaagtcttgatttctttctattt 6944  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 464
Target Start/End: Original strand, 32910657 - 32910693
Alignment:
Q  428 aatcaaatacatttgactttttgcttatatttaagat 464  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  32910657 aatcaaatatatttgactttttgattatatttaagat 32910693  T

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