View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20457_high_6 (Length: 427)
Name: NF20457_high_6
Description: NF20457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20457_high_6 |
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| [»] scaffold0232 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 42392452 - 42392028
Alignment:
| Q |
1 |
aaatttaagcacacatttaccttttaaaattcatagatattactcatttgaaatggccatgtgtattgttagtagtgttgcgggaaagaggttcatacca |
100 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42392452 |
aaatttaagcacatatttaccttttaaaattcataaatattactcatttgaaatggccatgtgtattgttagcagtgttgcgggaaagaggttcatacca |
42392353 |
T |
|
| Q |
101 |
-ggtgttgagtgacctaatggatatacttcttgttaagttgttataactaggagtgtgcatggttcataaaccaaaccaaaccatatccaatttatggtt |
199 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
42392352 |
aggtgttgagtgacgtaatggttatacttcttgttaagttgttataactaggagtgtgcatggttcataaatcaaaccaaaccatattcaatttatggtt |
42392253 |
T |
|
| Q |
200 |
tggtttcttaaactgtttcagaaaaaaccaa-nnnnnnnacgaaacagttcaggtttgctttgggtccggttcagaaccggtttgtgtt---nnnnnnng |
295 |
Q |
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||||||||||| ||||||||||||||||||| |||||| |||||| ||||| ||||||||||||||||||| |||||| || | |
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| T |
42392252 |
tggtttcttaacctgtttcagaaaaaaccaattttttttacgaaatagttcaagtttgttttgggtccggttcagaactggtttgcattaaaaaaaaaag |
42392153 |
T |
|
| Q |
296 |
cggtttatttattttaccagtttctcaaacagtttccatggcttcccttcttagcttcttgaagtttatcttgccttttctaaggttgttttaaggatgt |
395 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
42392152 |
cggtttattcattttaccagtttctcaaacagttttcatggcttcccttcttagcttcttgaagtttatcttgccttgtctaaggtagttttaaggatgt |
42392053 |
T |
|
| Q |
396 |
tagttctaggtcattttgatgatgt |
420 |
Q |
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| T |
42392052 |
tagttctaggtcattttgatgatgt |
42392028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 4010623 - 4010590
Alignment:
| Q |
148 |
taggagtgtgcatggttcataaaccaaaccaaac |
181 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
4010623 |
taggggtgtgcatggttcataaaccaaaccaaac |
4010590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0232
Description:
Target: scaffold0232; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 183
Target Start/End: Original strand, 21423 - 21452
Alignment:
| Q |
154 |
tgtgcatggttcataaaccaaaccaaacca |
183 |
Q |
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| T |
21423 |
tgtgcatggttcataaaccaaaccaaacca |
21452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 7528122 - 7528163
Alignment:
| Q |
140 |
gttataactaggagtgtgcatggttcataaaccaaaccaaac |
181 |
Q |
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|||||||||||| ||||||||| ||||| ||||||||||||| |
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| T |
7528122 |
gttataactaggggtgtgcatgattcatgaaccaaaccaaac |
7528163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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