View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20457_high_9 (Length: 337)
Name: NF20457_high_9
Description: NF20457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20457_high_9 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 9842725 - 9842390
Alignment:
| Q |
1 |
attagaacaatgtatgcattttgaagagaaaggacgtactgtatgtaactattcaacaaatgtttataggaacaaaattttttaacaaagataaagaata |
100 |
Q |
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| T |
9842725 |
attagaacaatgtatgcattttgaagagaaaggacgtactgtatgtaactattcaacaaatgtttataggaacaagaatttttaacaaagataaagaata |
9842626 |
T |
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| Q |
101 |
aaaacatgctgttcttttttatactatagtcggtttctaatcgcaagaagaag--nnnnnnnngtaatcggatttgacttcaaaagtattataaaaaatt |
198 |
Q |
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| T |
9842625 |
aaaacatactgttcttttttatactatagtcggtttctaatcgcaagaagaagaagaaaaaaagtaatcgtatttgacttcaaaagtattgtaaaaaatt |
9842526 |
T |
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| Q |
199 |
acagcaaatgacttttggaattacaacaatctttcatcaatctttgcacatgatgataacagagcaatggaacagaagatttcaaacagtatcatattag |
298 |
Q |
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| T |
9842525 |
gcagaaaatgactcttggaattacaacaatctttcatcaatctttgcac---atgataacaaagcaacggaacagaagatttcaaacagtatcatattag |
9842429 |
T |
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| Q |
299 |
cattcagtttaaagcaacaaattaagaatattacaaacc |
337 |
Q |
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| T |
9842428 |
catttagtttaaagcaacaaattaagaatattacaaacc |
9842390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 131 - 337
Target Start/End: Complemental strand, 9853541 - 9853335
Alignment:
| Q |
131 |
cggtttctaatcgcaagaagaagnnnnnnnngtaatcggatttgacttcaaaagtattataaaaaattacagcaaatgacttttggaattacaacaatct |
230 |
Q |
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| T |
9853541 |
cggtttctaatcgcaagaagaagaaaaaaaagtaatcggatttgacttcaaaagtattataaaaaattacagaaaatgacttttggaattacaacaatct |
9853442 |
T |
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| Q |
231 |
ttcatcaatctttgcacatgatgataacagagcaatggaacagaagatttcaaacagtatcatattagcattcagtttaaagcaacaaattaagaatatt |
330 |
Q |
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| T |
9853441 |
ttcatcaatctttgcacatgatgataacaaagcaatggaacagaagatttcaaacagtatcatattagcattcagtttaaagcaacaaattaagaatatt |
9853342 |
T |
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| Q |
331 |
acaaacc |
337 |
Q |
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| T |
9853341 |
acaaacc |
9853335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 11772810 - 11772731
Alignment:
| Q |
255 |
taacagagcaatggaacagaagatttcaaacagtatcatattagcattcagtttaaagcaacaaattaagaatattacaaa |
335 |
Q |
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| T |
11772810 |
taacaaagcagtgaaacagaaaatttgaaacagtatcatatgaacattcactt-aaagctacaaattaagaatattacaaa |
11772731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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