View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20457_low_1 (Length: 1001)
Name: NF20457_low_1
Description: NF20457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20457_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 235 - 689
Target Start/End: Complemental strand, 7722904 - 7722448
Alignment:
| Q |
235 |
tctcaactgtcaatttgctc--accttgctgcaacggaactttgcctgtacatactaattatcatacaggtgactaattatatacattaatatgtattgt |
332 |
Q |
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| T |
7722904 |
tctcaactgtcaatttgctctcaccttgctgcaacggaactttgcctgtacatactaattatcatacaggtgactaattatatacattaatatgtattgt |
7722805 |
T |
|
| Q |
333 |
gaccaaacataattacaaattcaaacattttcagccacaggcacatttgaaggagacttgatgaggggctctttgatcttgtcattgagtttagaaggag |
432 |
Q |
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| T |
7722804 |
gaccaaacataattacaaattcaaacattttcagccacaggcacatttgaaggagacttgatgaggggctctttgatcttgtcattgagtttagaaggag |
7722705 |
T |
|
| Q |
433 |
aaattgatgatgttttctttgatggatacaacacataatgttgacacatgaaaagaagatcaaagaacatacaaacctgaaaatgtttacaatatacaca |
532 |
Q |
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| T |
7722704 |
aaattgatgatgttttctttgatggatacaacacataatgttgacacatgaaaagaagatcaaagaacatacaaacctgaaaatgtttacaatatacaca |
7722605 |
T |
|
| Q |
533 |
agtaagaaaattaaggtaattttaacttnnnnnnnntgttgtctttatgaccgattaagcaatcgatatttcaacctacattggtgtctaaatttttcgc |
632 |
Q |
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| T |
7722604 |
agtaagaaaattaaggtaattttaacttaaaaaaaatgttgtctttatgaccgattaagcaatcaatttttcaacctacattggtgtctaaatttgtcgc |
7722505 |
T |
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| Q |
633 |
ttaatgaattagtgatcgatttagaaaccaatttgtaaaaatttcctaaacaactag |
689 |
Q |
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| T |
7722504 |
ttaatgaattagtgatcgatttagaaaccaatttgtaaaaatttcctaaacaactag |
7722448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 688 - 989
Target Start/End: Complemental strand, 7721993 - 7721692
Alignment:
| Q |
688 |
agatatcaactcatcaaaattgaaatgaatgaaagagtaaagggaccaattcttaccagagataacaatacttttccaaggttcccagagaaattcaccc |
787 |
Q |
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| T |
7721993 |
agatatcaactcatcaaaattgaaatgaatgaaagagtaaagggaccaattcttaccagagataacaatacttttccaaggttcccagagaaattcaccc |
7721894 |
T |
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| Q |
788 |
aagagtctagaatgnnnnnnngagaagaaatgttatta-attacatgcattgatgcatcaagtcatttggaatgttactataatgtgaatttggaaataa |
886 |
Q |
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| T |
7721893 |
aagagtctagaatgaaaaaa-gagaagaaatgttattatattacatgcattgatgcattaagtcatgtggaatgttaatataatgtgaatttggaaataa |
7721795 |
T |
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| Q |
887 |
agacatactttgatcaattgattgtataaccatctgagcataatttgccattcctccacagaaatcaaggaacacatttccaatgctaaatccatctgtg |
986 |
Q |
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| T |
7721794 |
agacatactttgatcaattgattgtataaccatctgagcataatttgccattcctccacagaaatcaaggaacacatttccaatgctaaatccatctgtg |
7721695 |
T |
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| Q |
987 |
ctc |
989 |
Q |
| |
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||| |
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| T |
7721694 |
ctc |
7721692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 7724545 - 7724341
Alignment:
| Q |
18 |
atgaattgtttcactctccttttgatttgtttggaaacaaatcatatgaattttctccaatttttgtatatgcatcatgcaactaagttttgagtactct |
117 |
Q |
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| T |
7724545 |
atgaattgtttcactctccttttgatttgtttggaaacaaatcatatgaattttctccaatttttgtatatgcatcatgcaactaagttttg-------- |
7724454 |
T |
|
| Q |
118 |
tatagctactatgctatattttctatgcatttgtagttcgaaagatcagggaatgtctgaatcatcaaagaacaataaattgatggcaagacaatttgct |
217 |
Q |
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| T |
7724453 |
------ta-tatgctatattttctttgcatttgtagttcgaaagatcagggaatgtctgaatcatcaaagaacaagaaattgatggcaagacaatttgct |
7724361 |
T |
|
| Q |
218 |
aagcgaagaatcaattctct |
237 |
Q |
| |
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|||||||||||||||||||| |
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| T |
7724360 |
aagcgaagaatcaattctct |
7724341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 948 - 989
Target Start/End: Complemental strand, 7738147 - 7738106
Alignment:
| Q |
948 |
aaatcaaggaacacatttccaatgctaaatccatctgtgctc |
989 |
Q |
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| T |
7738147 |
aaatcaaggagaacattgccaatgctaaatccatctgtgctc |
7738106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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