View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20457_low_10 (Length: 330)
Name: NF20457_low_10
Description: NF20457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20457_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 1712281 - 1712596
Alignment:
| Q |
7 |
atagggttatagttctttatgttattccaaaagttagaggtataaaatatagaaatgttgtttaacaacatttagggttatttgtgacgagnnnnnnnnt |
106 |
Q |
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| T |
1712281 |
atagggttatagttctttatgttattccaaaagttagaggtataaaatatagaaatgttgtttaacaacatttagggttatttgtgacgagaaaaaaa-t |
1712379 |
T |
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| Q |
107 |
tgaattcttatgtatattcattatgtgagaggtaaaagtgattctaggattataaaattgatgttgacatgttattttggatgcttttgaagataattgt |
206 |
Q |
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| T |
1712380 |
tgaattcttatgtatattcactatgtgagaggtaaaagtgattctaggattataaaattgatgttgacatgttattttggatgcttttgaagataattgt |
1712479 |
T |
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| Q |
207 |
ttttgtctaaatagtaggttttaatttgaagttgagataaaacttgtctcaaaataaaaattagtttcaaacctttttaac--------ttataaattca |
298 |
Q |
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| T |
1712480 |
ttttgtctaaatagtaggttttaatttgaagttgagataaaacttgtctcaaaataaaaattagtttcaaacctttttaacaactgtttttataaattca |
1712579 |
T |
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| Q |
299 |
ttattcaactaacttgt |
315 |
Q |
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| T |
1712580 |
ttattcaactaacttgt |
1712596 |
T |
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