View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20457_low_3 (Length: 584)
Name: NF20457_low_3
Description: NF20457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20457_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 22 - 571
Target Start/End: Complemental strand, 41981534 - 41980988
Alignment:
| Q |
22 |
tcgaaatatacgtaagtgactcatatcatcttgcaaaagatacaaaatgaacttttgcaaaatgaaattccacaccaactcatcgtaatttcgacaaact |
121 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41981534 |
tcgaaatatacgtaagtgagtcataccatcttgcaaaa-atacaaaatgaacttttgcaaaatgaaattcgacaccaactcatcgtaatttcgacaaact |
41981436 |
T |
|
| Q |
122 |
tatcgaagaaacacnnnnnnnnnnnaaattactattaactatttccattcaaaatattttcaggtaacttgtcctcataccacattaactgcggcacttc |
221 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41981435 |
tatcaaagaaacattttttttttt--aattactattaactatttccattcaaaatattttcaggtaacttgtcctcataccacattaactgcggcacttc |
41981338 |
T |
|
| Q |
222 |
aacaaacataacagaccccttcaatacaacatggctctccgaccgttactacaccggcggcgccaccaccaccgtctcggagccactccgcttcaacctc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41981337 |
aacaaacataacagaccccttcaatacaacatggctctccgaccgttactacaccggcggggccaccaccaccgtctcggagccactccgcttcaacctc |
41981238 |
T |
|
| Q |
322 |
ccctcagaaaaaaccctccgcttcttcccttcctcctcctccggcnnnnnnnnctgctactccttcccttcacttccctccgcccgctacctcctccgca |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41981237 |
ccctcagaaaaaaccctccgcttcttcccttcctcctcctccggcaaaaaaaactgctactccttcccttcacttccctccgcccgctacctcctccgca |
41981138 |
T |
|
| Q |
422 |
ccttcaccgtctatgacaactacgacgcaaagtctcgtcctccttccttcgatgtcgcactctcctccaccatcattttcaactggcgttctccctggcc |
521 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41981137 |
ccttcaccgtctacgacaactacgacgcaaagtctcgtcctccttccttcgacgtcgcactctcctccaccatcattttcaactggcgttctccctggcc |
41981038 |
T |
|
| Q |
522 |
tgaatccacagcacgcgacggcgcttatgctgatcttttcgcttttcttc |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41981037 |
tgaatccacagcacgcgacggcgcttatgctgatcttttcgcttttcttc |
41980988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 473
Target Start/End: Original strand, 22083498 - 22083769
Alignment:
| Q |
199 |
taccacattaactgcggcacttcaacaaacataacagaccccttcaatacaacatggctctccgaccgttactacaccggcggcgccaccaccaccgtct |
298 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| || ||| | ||||| || || |||||||||||||||| || |||||||||| ||||| ||||| |
|
|
| T |
22083498 |
taccacattgactgcggcactccaactaacaccaccgactcattcaacactacttggctctccgaccgtttcttcaccggcggcaccaccggtttcgtct |
22083597 |
T |
|
| Q |
299 |
cggagccactccgcttcaacctcccctcagaaaaaaccctccgcttcttcccttcctcctcctccggcnnnnnnnnctgctactccttcccttcacttc- |
397 |
Q |
| |
|
| || ||||||| ||| ||| || | |||||||| ||||||||||||||| |||||||||| |||||||||| ||||||| || | |
|
|
| T |
22083598 |
ctgaaccactccagttccaccaccaccacgaaaaaactctccgcttcttccct---atctcctccggcaaaaaaaactgctactccatcccttc-ctcca |
22083693 |
T |
|
| Q |
398 |
cctccgcccgctacctcctccgcaccttcaccgtctatgacaactacgacgcaaagtctcgtcctccttccttcga |
473 |
Q |
| |
|
|| || | ||||||||| | ||||||||| |||||| ||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
22083694 |
ccacctcacgctacctcattcgcaccttcgtcgtctacgacaactacgacggcaagtcgcatcctccttccttcga |
22083769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University