View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20457_low_4 (Length: 461)
Name: NF20457_low_4
Description: NF20457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20457_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 53677461 - 53677706
Alignment:
| Q |
1 |
tacttctctccatttcttctctgcaacaacctgaaatttgaaaattattaactattatctaatttatagtgcaaaaaatagtataaaacagtttaatctt |
100 |
Q |
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| T |
53677461 |
tacttctctccatttcttctctgcaacaacctgaaatttgaaaattattaactattatctaatttatagtgcaaaaaatagtataaaacagtttaatctt |
53677560 |
T |
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| Q |
101 |
ataacgaagggagagaatccaccttctcataaccacttctccttgtaacttccacgtagagaacgtgcaaatcaagctccttaccaccaatcacaggaat |
200 |
Q |
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| T |
53677561 |
ataacgaagggagagaatccaccttctcataaccgcttctccttgtaacttccacgtagagaacgtgcaaatcaagctccttaccaccaatcacaggaat |
53677660 |
T |
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| Q |
201 |
cctatgcaaaatgaaatcacatttataatagtactttgatgttgtt |
246 |
Q |
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| T |
53677661 |
cctatgcaaaatgaaatcacatttataatagtactttgattttgtt |
53677706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 289 - 452
Target Start/End: Original strand, 53677749 - 53677912
Alignment:
| Q |
289 |
tagttagtacatgaattttgtagccatgagaaagtgaaagcgacgaagagtgtcccaaaagagagtagggtcgttaacgacgtcgttgtgagaggcgagt |
388 |
Q |
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| T |
53677749 |
tagttagtacatgaatttggtagccatgagaaagtgaaagcgacgaagagtgtcccaaaagagagtagggtcgttaacgacgtcgttgtgagaggcgagt |
53677848 |
T |
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| Q |
389 |
gggggaggatagtgtttggcttcgtcgtcgtcaccggagttcttgcttctcaccgctgatgatg |
452 |
Q |
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| T |
53677849 |
gggggaggatagtgtttggcttcgtcgtcgttgccggagttcttgcttctcaccgccgatgatg |
53677912 |
T |
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