View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20457_low_5 (Length: 457)
Name: NF20457_low_5
Description: NF20457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20457_low_5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Complemental strand, 42392852 - 42392412
Alignment:
| Q |
17 |
atattgatcaagggaatctagattcagcactcaatgctagtataatctcttgcgctttatgtatcgagtatttgtctgagcattttaattctctttcaaa |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
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| T |
42392852 |
atattgatcaagggaatctagattcagcgctcaatgctagtataatctcttgcgctttatgtatcaagtatttgtctgagcatattcattctctttcaaa |
42392753 |
T |
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| Q |
117 |
tgttttcaataaaaatatgtactccagttgtgtataatgctttgaatttgagataatctaaatagcttaaagtctgcaaaaacattattacatcaacata |
216 |
Q |
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| T |
42392752 |
tgttttcaataaaaatatgtactccagttgtgtataatgctttgaatttgagataatctaaatagcttaaagtctgcaaaaacattattacatcaacata |
42392653 |
T |
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| Q |
217 |
taaaatcagaatgaatacttgtatttagatgtgtgctacttgaagtttagtctaaataatttatttagctacactaaataaaaatggaagagaaatttgt |
316 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42392652 |
taaaatcaaaatgaatacttgtatttagatgtgggctacttgaagtttagtctcaataatttatttagctacactaaataaaaatggaagagaaatttgt |
42392553 |
T |
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| Q |
317 |
tttcatttgtctgaaaagtttgaagatgagccaattataactggtacttttcatgttaacatgcttctttttgatacatacggtgtattcttcagtctta |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
42392552 |
tttcatttgtctgaaaagtttgaagatgagccaattataactggtacttttcatgttgacatgcttcttttcgatacatacagtgtattcttctgtctta |
42392453 |
T |
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| Q |
417 |
aaatttaagcacatatttaccttttaaaattcataaatatt |
457 |
Q |
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| T |
42392452 |
aaatttaagcacatatttaccttttaaaattcataaatatt |
42392412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 194 - 357
Target Start/End: Complemental strand, 42386808 - 42386634
Alignment:
| Q |
194 |
aaaaacattattacatcaacatataaaatcagaatgaatacttgtatttagatgtgtgctacttgaagtttagtct-aaataatttatttagctacact- |
291 |
Q |
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|||||||||||||||| | || |||||||| ||||||| |||| ||| ||||||| ||||| | ||||||||| |||||||||||||||||||||| |
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| T |
42386808 |
aaaaacattattacattagcaaataaaatcggaatgaaaacttacattaagatgtggtttactttaggtttagtcttaaataatttatttagctacactg |
42386709 |
T |
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| Q |
292 |
------aaat---aaaaatggaagagaaatttgttttcatttgtctgaaaagtttgaagatgagccaattataac |
357 |
Q |
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| T |
42386708 |
tataaaaaataagaaaaatggaagagaattttgttttcatttgtcgaaaaaatttgaagatgaaccaaatataac |
42386634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 42376095 - 42375951
Alignment:
| Q |
46 |
ctcaatgctagtataatctcttgcgctttatgtatcgagtatttgtctgagcattttaattctctttcaaatgttttcaataaaaatatgtactccagtt |
145 |
Q |
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| T |
42376095 |
ctcaatgctgatataatcatttgctatttatgtatcaagtatattaatgagcaaattcattctctttcaaatgttttcgatcaaagtatttatctcagtt |
42375996 |
T |
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| Q |
146 |
gtgtataatgctttgaatttgagataatctaaatagcttaaagtc |
190 |
Q |
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| T |
42375995 |
gtctataatgtgttgaatttgagataataaaaatagttttaagtc |
42375951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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