View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20457_low_8 (Length: 389)
Name: NF20457_low_8
Description: NF20457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20457_low_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 190 - 389
Target Start/End: Complemental strand, 53679605 - 53679406
Alignment:
| Q |
190 |
acctgcttaatcaacattgaatcacctttcttactttcgtttgattttcttgaaaatccatccatttagatcagaaatagaacctaattgaattgatttt |
289 |
Q |
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| T |
53679605 |
acctgcttaatcaacaccgaatcacctttcttactttcgtttgattttcttgaaaatccatccatttagatcagaaatagaacctaattgaattgatttt |
53679506 |
T |
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| Q |
290 |
acatgcttaatcaactcccttcatgattcttgaattgtttgattgaaagattggtaaaaagtttcaattttgttcaccacgtttaacgttttaaatatgt |
389 |
Q |
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| T |
53679505 |
acatgcttaatcaactcccttcatgattcttgaattgtttgattgaaagattggtaaaaaatttcaattttgttcaccatgtttaacgttttaaatatgt |
53679406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 53679776 - 53679678
Alignment:
| Q |
19 |
cttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaacaatcttcacatatttctacttttcatgaaatcatcattctcaatctccc |
117 |
Q |
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| T |
53679776 |
cttcttccctttcttctcttccatgtaaatccaaataccattcatttaacaatcttcacttatttctacttttcatgaaatcgtcattctcaatctccc |
53679678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 19266159 - 19266212
Alignment:
| Q |
19 |
cttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaacaatc |
72 |
Q |
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| T |
19266159 |
cttcttccttttcttctcttctctgtaaatccaaattccattcattcaacaatc |
19266212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 32375207 - 32375255
Alignment:
| Q |
19 |
cttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaa |
67 |
Q |
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| T |
32375207 |
cttcttccttttcttctcttctctgtaaatccaaatatcattcattcaa |
32375255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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