View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20458_low_1 (Length: 479)
Name: NF20458_low_1
Description: NF20458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20458_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 33573232 - 33573697
Alignment:
| Q |
1 |
gataatgtaggaacagtgttcattgatgactggaaaacaaaggaaacaagaaaannnnnnnnnnnn----ggattggaccaatattagaaagttgaccaa |
96 |
Q |
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| T |
33573232 |
gataatgtaggaacagttttcattgatgactggaaaacaaaggaaacaagaaaaagagagagagagagagggattggaccaatattagaaagttgaccaa |
33573331 |
T |
|
| Q |
97 |
atataataatatatcgtatgaattttactctagccataattttcatacaatattggctatactgaaaactaggatcttcacaaaataccaaccatataga |
196 |
Q |
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| T |
33573332 |
atataataatatattatatgaattttactctagccataattttcatacaacattggctatactgaaaactaggatcttcacaaaataccaaccatataga |
33573431 |
T |
|
| Q |
197 |
ttcacattgttaacctcttaaaattcacattgttaatttaaattcttcttatatactttcttccttgggttattaatttcttccaatggttcttgtttgt |
296 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33573432 |
ttcacattgttaacctcttaaaatacacattgttaatttaaattcttcttatatactttcttccttgggttattaattttttccaatggttcttgtttgt |
33573531 |
T |
|
| Q |
297 |
gacaacttcaatatccttcaatttcttgaatacccatattcaagtttattggatcgatcctctnnnnnnnnntatgcaatagatcaatagaaatatacac |
396 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33573532 |
gacaaattcaatatccttcaatttcttgaatacccatattcaagtttattggatcgatcctctaaaaaaatatatgcaatagatcaatagaaatatacac |
33573631 |
T |
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| Q |
397 |
atgtatcgaatttatcatgtgctcaatattttggtcattgctgttttattttagtccataaaatat |
462 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33573632 |
atgtatctaatttatcatgtgctcaatattttggtcattgctgttttattttagaccataaaatat |
33573697 |
T |
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