View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20458_low_3 (Length: 310)
Name: NF20458_low_3
Description: NF20458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20458_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 28894182 - 28893902
Alignment:
| Q |
18 |
atgttttactgttggatactaaaatcattatgtaaagacatattttggttttctttgtgactttcttttttatggttgattacaggaattgccttaaaac |
117 |
Q |
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| T |
28894182 |
atgttttactgttggatactaaaatcattatgtaaagacatattttggttttgtttgtgactttcttttttatggttgattacaggaattgccttaaaac |
28894083 |
T |
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| Q |
118 |
ctatcatgctgaatgcctggggaaagatgattcctttttgacaaatgatgataattggtgttgtggtaagttgcttcaccgtttacttttgcaattatta |
217 |
Q |
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| T |
28894082 |
ctatcatgctgaatgcctggggaaagatgattcctttttgacaaatgatgataattggtgttgtggtaagttgcttcaccgtttacttttgcaattatta |
28893983 |
T |
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| Q |
218 |
tgttggtgtcgtacatatgcatttgatactgccatgacgataattggtgttcgagttttgcttttgaacattctgtatatt |
298 |
Q |
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| T |
28893982 |
tgttggtgtcgtacatatgcatttgatactgccatgacgataattggtgttcgagttttgcttttgaacattctgtatatt |
28893902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 28904096 - 28903949
Alignment:
| Q |
71 |
tttgtgactttcttttttatggttgattacaggaattgccttaaaacctatcatgctgaatgcctggggaaagatgattcctttttgacaaatgatgata |
170 |
Q |
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| T |
28904096 |
tttgtgactttcttttttatggttgattacagggattgccttaaaacctatcatgctgaatgtgtaaaacaagatgcttcctttttgaagaatgacgata |
28903997 |
T |
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| Q |
171 |
attggtgttgtggtaagttgcttcaccgtttacttttgcaattattat |
218 |
Q |
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| T |
28903996 |
ggtggtgttgtggtaagctgcttcaccgtttatttttgcctttattat |
28903949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 73 - 209
Target Start/End: Complemental strand, 28927191 - 28927055
Alignment:
| Q |
73 |
tgtgactttcttttttatggttgattacaggaattgccttaaaacctatcatgctgaatgcctggggaaagatgattcctttttgacaaatgatgataat |
172 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||| | |||| ||||||| || ||||| ||||| |
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| T |
28927191 |
tgtgactttcttttttatggttgattaaagggattgccttaaaacctatcatgctaaatgcctgggtcatgatgcttcctttatggagaatgacaataat |
28927092 |
T |
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| Q |
173 |
tggtgttgtggtaagttgcttcaccgtttacttttgc |
209 |
Q |
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| T |
28927091 |
tggtgttgtggtaagctgcttcatcttttatttttgc |
28927055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 188
Target Start/End: Complemental strand, 28938687 - 28938580
Alignment:
| Q |
81 |
tcttttttatggttgattacaggaattgccttaaaacctatcatgctgaatgcctggggaaagatgattcctttttgacaaatgatgataattggtgttg |
180 |
Q |
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| T |
28938687 |
tcttttttatggttgattaaaggaattgccttaaaacctatcatgctaattgtgttggccaagatgattcctttctgaagaatgacgattattggtgttg |
28938588 |
T |
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| Q |
181 |
tggtaagt |
188 |
Q |
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|||||||| |
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| T |
28938587 |
tggtaagt |
28938580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 28917872 - 28917734
Alignment:
| Q |
71 |
tttgtgactttcttttttatggttgattacaggaattgccttaaaacctatcatgctgaatgcctggggaaagatgattcctttttgacaaatgatgata |
170 |
Q |
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||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||| || ||||| || |||||| ||||||||||| ||||| ||| |
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| T |
28917872 |
tttgtgattttcttttttatggttgattacagggattgctttaaagcctatcacgcggaatgtgtgaaacaagatgcctcctttttgacgaatgacaata |
28917773 |
T |
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| Q |
171 |
attggtgttgtggtaagttgcttcaccgtttacttttgc |
209 |
Q |
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| T |
28917772 |
ggtggtgttgtggtaagctgcttcaccgtttatttttgc |
28917734 |
T |
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