View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20458_low_5 (Length: 218)
Name: NF20458_low_5
Description: NF20458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20458_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 42552403 - 42552214
Alignment:
| Q |
15 |
aagaaaaaaggcgaagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagag |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42552403 |
aagaaaaaaggcgaagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaatgacaaaggtgcaaatcatgttaacagag |
42552304 |
T |
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| Q |
115 |
acattaatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaat |
204 |
Q |
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| T |
42552303 |
acattaatgctttgagcagcagaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaat |
42552214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 1238930 - 1239102
Alignment:
| Q |
28 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
127 |
Q |
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| T |
1238930 |
aagaagatgaagagtccaaacttcatgtggcacaacatggtggtgaaaacttgagcaatggcaaatgtgaaaatcatgttaaccgaaacattgacacttt |
1239029 |
T |
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| Q |
128 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgc |
200 |
Q |
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| T |
1239030 |
gagccgctgatcgaacctcaagtggaaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgc |
1239102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 42517539 - 42517724
Alignment:
| Q |
18 |
aaaaaaggcgaagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagaca |
117 |
Q |
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| T |
42517539 |
aaaaaatgcaaagaagatgaatagtccaaacttcatgtggcacaacatggcggtgaaaacttgagcaatggcaaatgtgaaaatcatgttaacagaaaca |
42517638 |
T |
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| Q |
118 |
ttaatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaa |
203 |
Q |
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| T |
42517639 |
ttgacactttgagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcaaa |
42517724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 18233814 - 18233999
Alignment:
| Q |
19 |
aaaaaggcgaagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacat |
118 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
18233814 |
aaaaaggcgaagaagataaataatccaaacttcatgtgacaaagcattgtagtgaaaatttgagcaatgataaaggtgcaaatcatgttaacagagacat |
18233913 |
T |
|
| Q |
119 |
taatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaat |
204 |
Q |
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| T |
18233914 |
tgatactttgagccgcagaacgaacttcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaat |
18233999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 41971426 - 41971607
Alignment:
| Q |
18 |
aaaaaaggcgaagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagaca |
117 |
Q |
| |
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|||||| || |||||||| || | |||||||||||||| || ||| || ||||||| | |||||| | |||| ||| ||||||||||||| || ||| |
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| T |
41971426 |
aaaaaatgcaaagaagatgaagagtccaaacttcatgtggcacgacatggtggtgaaaactcgagcaatggcaaatgtgaaaatcatgttaaccgaaaca |
41971525 |
T |
|
| Q |
118 |
ttaatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatg |
199 |
Q |
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|| | |||||||| || || || | ||||| |||||| | ||||| ||||||||||| | ||||||||||||||||||| |
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| T |
41971526 |
ttgacactttgagccgctgatcgcacctcaagtggaaaagtttcacttggcaccaaccatccaagaggaccccaagaccatg |
41971607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 36202883 - 36202701
Alignment:
| Q |
22 |
aaggcgaagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaa |
121 |
Q |
| |
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||||| ||||||| ||||| ||||||||||||| |||||||||| | ||||| ||| ||||| | |||||| ||| |||||| ||||| || || | |
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| T |
36202883 |
aaggcaaagaagaggaacaaaccaaacttcatgtgacaaagcattatcaagaaaacttgtgcaactaagaaggtgaaaagcatgttcacagatacgttta |
36202784 |
T |
|
| Q |
122 |
tgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaat |
204 |
Q |
| |
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|||||||| || |||||||| || | || |||||||||||||| |||||||||| ||||||||||| ||||| |||||| |
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| T |
36202783 |
cactttgagctgcagaacgaatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaat |
36202701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 35922164 - 35922339
Alignment:
| Q |
22 |
aaggcgaagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaa |
121 |
Q |
| |
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||||| |||||||||||||| ||||||||||||| ||| |||| || ||||| ||| ||||| | || ||| ||| |||||| ||||| ||||| | |
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| T |
35922164 |
aaggcaaagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaatgtgaaaaacatgttcacagatacattga |
35922263 |
T |
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| Q |
122 |
tgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagacca |
197 |
Q |
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|||||||||||||| ||||| || | ||||| |||||||| | ||||||||||| ||||||||||| ||||| |
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| T |
35922264 |
cactttgagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggaccccatgacca |
35922339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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