View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20459_low_1 (Length: 667)
Name: NF20459_low_1
Description: NF20459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20459_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 64 - 648
Target Start/End: Complemental strand, 825889 - 825329
Alignment:
| Q |
64 |
agtgccataaggacattgggttaaggaattcataaaagaaaagtttgtcttggaaatacaagttaaacattgtcaatgtaataaatacatcattttgcta |
163 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
825889 |
agtgtcataaggacattgg-ttaaggaattcataaaagaaaagtttgtcttggaaatacaagttaaacattgtcaatgtaataaatacatcatt------ |
825797 |
T |
|
| Q |
164 |
tatgaattgcatattttgattcttaatcaaatgtcttaa-ggacatttgttggcattctcctatacaataaaataaatagtgattaaatgaataatatca |
262 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
825796 |
---------------ttgattcttaatcaaatgtcttaaaggacatttgttggcattctcctataaaataaaataaatagtgattaaatgaataatatca |
825712 |
T |
|
| Q |
263 |
tggatgcatttgataatagtaatatatctcgattaagggagaaatctgattaacattttgtaatcatggactaaattaagcatgtatgtattgaataaat |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
825711 |
tggatgcatttgataatagtaatatatctcgattaagggagaaatctgattaacattttgtaatcatggactaaattaagcatgtatgtattgaataaat |
825612 |
T |
|
| Q |
363 |
aaa-taaaaaagtactgcagtaccttaaaaagaacaggagtttgtttaagtggaccctgggaaactctgccttcataaagcctgcactgcgatcaagctg |
461 |
Q |
| |
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||| ||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
825611 |
aaaataaaaaaa----gtaataccttaaaaagaacaggagtttgtttaagtggaccctgggaaactctgccttcataaagcctgcactgcgatcaagctg |
825516 |
T |
|
| Q |
462 |
tcatcattcatgagtatccaatttagtccctcacagtgttcaaattagtcctcgggtaactaactaagtacctgattttgacgctgccttcttgaacatc |
561 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
825515 |
tcatcattcataggtatccaatttagtccctcacagtgttcaaattagtcatcgggtaactaactaagtacctgattttgacgctgccttcttgaacatc |
825416 |
T |
|
| Q |
562 |
ttgagttttcaatccaccaccaagtgaatattgatcggtactggaagtagtgacgttcatgaaaccatagttgccaatgggtcgacc |
648 |
Q |
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| T |
825415 |
ttgagttttcaatccaccaccaagtgaatattgatcggtactggaagtagtgacgttcatgaaaccatagttgccaatgggtcgacc |
825329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 32320905 - 32320865
Alignment:
| Q |
94 |
cataaaagaaaagtttgtcttggaaatacaagttaaacatt |
134 |
Q |
| |
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|||||||||||| ||||||||||||||||||| ||||||| |
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| T |
32320905 |
cataaaagaaaaacttgtcttggaaatacaagtcaaacatt |
32320865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 17712813 - 17712773
Alignment:
| Q |
84 |
ttaaggaattcataaaagaaaagtttgtcttggaaatacaa |
124 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
17712813 |
ttaagaaattcataaaagaaaagtttatcttggaaatacaa |
17712773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 8291064 - 8291140
Alignment:
| Q |
84 |
ttaaggaattcataaaagaaaagtttgtcttggaaatacaagttaaaca-ttgtcaatgtaataaatacatcatttt |
159 |
Q |
| |
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||||||||| |||| ||| ||| |||||||||||||||||||| ||||| |||||| || |||| ||||||||||| |
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| T |
8291064 |
ttaaggaatacatataaggaaaatttgtcttggaaatacaagtcaaacacttgtcatagtcataattacatcatttt |
8291140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 35738010 - 35737945
Alignment:
| Q |
64 |
agtgccataaggacattgggttaaggaattcataaaagaaaagtttgtcttggaaatacaagttaaa |
130 |
Q |
| |
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|||||| ||||| |||||| |||| |||||||||||| ||||||| |||||||||||||| ||||| |
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| T |
35738010 |
agtgccctaagggcattgg-ttaaagaattcataaaatgaaagtttttcttggaaatacaatttaaa |
35737945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 39158647 - 39158741
Alignment:
| Q |
64 |
agtgccataaggacattgggttaaggaattcataaaagaaaagtttgtcttggaaatacaagttaaacatt-gtcaatgtaataaatacatcattt |
158 |
Q |
| |
|
|||||| ||||| |||||| |||||||| | ||||||| ||| ||||||| | |||||||||| |||| || |||||| ||||||||||| ||||| |
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| T |
39158647 |
agtgccctaagggcattgg-ttaaggaacttataaaaggaaaatttgtctcgaaaatacaagtcaaacctttgtcaatataataaatacaacattt |
39158741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 9131700 - 9131763
Alignment:
| Q |
96 |
taaaagaaaagtttgtcttggaaatacaagttaaaca-ttgtcaatgtaataaatacatcatttt |
159 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||| |||| | ||||||||||||||||||| |
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| T |
9131700 |
taaaagaaaattttgt-ttggaaatacaagtcaaacacttgtggaagtaataaatacatcatttt |
9131763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 9964708 - 9964664
Alignment:
| Q |
84 |
ttaaggaattcataaaagaaaagtttgtcttggaaatacaagtta |
128 |
Q |
| |
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||||||||||||||||| || |||||||||| |||||||||||| |
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| T |
9964708 |
ttaaggaattcataaaaagaatgtttgtcttgaaaatacaagtta |
9964664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 51049823 - 51049871
Alignment:
| Q |
84 |
ttaaggaattcataaaagaaaagtttgtcttggaaatacaagttaaaca |
132 |
Q |
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|||||||||| | ||||||||| | ||||||| |||||||||||||||| |
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| T |
51049823 |
ttaaggaatttagaaaagaaaattatgtcttgaaaatacaagttaaaca |
51049871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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