View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20459_low_2 (Length: 593)
Name: NF20459_low_2
Description: NF20459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20459_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 180 - 576
Target Start/End: Original strand, 41845589 - 41845992
Alignment:
| Q |
180 |
gcaggtggggaagattgaagacggtattgagttcataaactcaaagcctaaacctctagcaatttatgccttcacaaagaacaaaacactgcagagaaga |
279 |
Q |
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| T |
41845589 |
gcaggtggagaagattgaagacggtattgagttcataaactcaaagcctaaacctctagcaatttatgccttcacaaagaacaatacactgcagagaaga |
41845688 |
T |
|
| Q |
280 |
ttggtatctgaaacatcatctgggagcattgtttttaatgatgcaattctacaggtatttatttgctgatagtgacttgcattatcacttatttaaaccg |
379 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41845689 |
ttggtatctgaaacatcatctgggagcattgtatttaatgatgcaattctacaggtatttatttgctgatagtgacttgcattatcacttatttcaaccg |
41845788 |
T |
|
| Q |
380 |
ctaattttatcaaacacttcaattattatacgaaagataac-------tannnnnnnnnngcagtatgtagcggataccatcccatttggaggagttggt |
472 |
Q |
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| T |
41845789 |
ctaattttatcaaacacttcgattattatactaaagataactttttttttttttttttttgcagtatatagcggataccatcccatttggaggagttggt |
41845888 |
T |
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| Q |
473 |
gaatgtggatttggcaagtatcatgggaagttctcatttgatgcattcagtcaccataaagctgtggctaggagaagttactacactgatttttggttca |
572 |
Q |
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| T |
41845889 |
gaatgtggatttggcaagtatcatgggaagttctcatttgatgcattcagtcaccataaagctgtggctaggagaagttactacactgatttttggttca |
41845988 |
T |
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| Q |
573 |
ggtt |
576 |
Q |
| |
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|||| |
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| T |
41845989 |
ggtt |
41845992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 41845420 - 41845522
Alignment:
| Q |
10 |
aatattactagatcccccacttgaatcagcaataatgacagaagaaatctttggccctgtgcttcccataataactgtaagatatatatctgcaacataa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41845420 |
aatattactagatcccccacttgaatcagcaataatgacagaagaaatctttggccctgtgcttcccataataactgtaagatatatatctgcaacataa |
41845519 |
T |
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| Q |
110 |
ttt |
112 |
Q |
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||| |
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| T |
41845520 |
ttt |
41845522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 180 - 338
Target Start/End: Original strand, 24401194 - 24401352
Alignment:
| Q |
180 |
gcaggtggggaagattgaagacggtattgagttcataaactcaaagcctaaacctctagcaatttatgccttcacaaagaacaaaacactgcagagaaga |
279 |
Q |
| |
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|||||||| |||||||| ||| ||||||| ||||||| ||| | |||||| ||||| || |||||| ||||| || |||||||||||||||| ||| |
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| T |
24401194 |
gcaggtggataagattgaggacagtattgaattcataagctctaggcctaagcctcttgccctttatgttttcaccaaaaacaaaacactgcagaacaga |
24401293 |
T |
|
| Q |
280 |
ttggtatctgaaacatcatctgggagcattgtttttaatgatgcaattctacaggtatt |
338 |
Q |
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| T |
24401294 |
atgatatctgaaacatcatcaggcagtgttactttcaatgatgcaattctgcaagtatt |
24401352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 455 - 569
Target Start/End: Original strand, 24401455 - 24401569
Alignment:
| Q |
455 |
ccatttggaggagttggtgaatgtggatttggcaagtatcatgggaagttctcatttgatgcattcagtcaccataaagctgtggctaggagaagttact |
554 |
Q |
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|||||||||||||| |||| | |||||||||||| ||| |||||||| ||||| ||||| ||||||||||||| ||||| | | ||| ||||||| || |
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| T |
24401455 |
ccatttggaggagtaggtggaagtggatttggcatgtaccatgggaaattctcctttgacacattcagtcaccaaaaagcaattgttagaagaagtttct |
24401554 |
T |
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| Q |
555 |
acactgatttttggt |
569 |
Q |
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||||||||||||| |
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| T |
24401555 |
taactgatttttggt |
24401569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 404
Target Start/End: Original strand, 7897150 - 7897179
Alignment:
| Q |
375 |
aaccgctaattttatcaaacacttcaatta |
404 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
7897150 |
aaccgctaattttatcaaacacttcaatta |
7897179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 404
Target Start/End: Original strand, 50541410 - 50541439
Alignment:
| Q |
375 |
aaccgctaattttatcaaacacttcaatta |
404 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50541410 |
aaccgctaattttatcaaacacttcaatta |
50541439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 401
Target Start/End: Complemental strand, 34394799 - 34394771
Alignment:
| Q |
373 |
taaaccgctaattttatcaaacacttcaa |
401 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34394799 |
taaaccgctaattttatcaaacacttcaa |
34394771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 32839447 - 32839479
Alignment:
| Q |
372 |
ttaaaccgctaattttatcaaacacttcaatta |
404 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
32839447 |
ttaaaccgctaattttatcaaacaattcaatta |
32839479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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