View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20459_low_3 (Length: 561)

Name: NF20459_low_3
Description: NF20459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20459_low_3
NF20459_low_3
[»] chr6 (17 HSPs)
chr6 (24-330)||(13910823-13911126)
chr6 (23-329)||(14109435-14109741)
chr6 (24-217)||(14024352-14024545)
chr6 (24-266)||(13931388-13931630)
chr6 (24-336)||(14083622-14083934)
chr6 (24-329)||(13473789-13474091)
chr6 (27-322)||(14014116-14014411)
chr6 (24-326)||(14046371-14046668)
chr6 (27-190)||(13876104-13876267)
chr6 (27-192)||(13893808-13893973)
chr6 (23-192)||(14021815-14021984)
chr6 (24-170)||(13863631-13863777)
chr6 (402-550)||(13910592-13910741)
chr6 (483-523)||(14024263-14024303)
chr6 (482-523)||(14109243-14109284)
chr6 (482-532)||(14106474-14106524)
chr6 (342-379)||(13910743-13910780)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 24 - 330
Target Start/End: Complemental strand, 13911126 - 13910823
Alignment:
Q  24 agtctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcttgaagacatgcttatttcagattcatgaacaatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  13911126 agtctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcatggagacatgcttatttcagattcatgaacaatt 13911027  T
Q  124 taggggatggtctttacatgaaatgcagatggtggctcaaagattaaccggtaataatactttaacttttaacctctcatatataattatatttcatatc 223  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  13911026 taggggatagtatttacatgaaatgcagatggtggctcaaggattaaccggtgataatacttt-acttttaacctctcatatataattatatttcatatc 13910928  T
Q  224 aaacagtcactgtaataaatcattgtagtatctaaaagtatatttctttacatataatttctattaaaaaactgttcatttttagtctctatagtttctt 323  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| | |||||||||||||||||  |||||| ||    
T  13910927 aaacagtcaccataatatatcattgtagtatctaaaagtatatttttttacatataatatctattaaaatattgttcatttttagtctc--tagtttatt 13910830  T
Q  324 aaataat 330  Q
    |||||||    
T  13910829 aaataat 13910823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 23 - 329
Target Start/End: Complemental strand, 14109741 - 14109435
Alignment:
Q  23 aagtctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcttgaagacatgcttatttcagattcatgaacaat 122  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||  |||||||||||     
T  14109741 aagtctgacattcggatttattataggcttttggggagtgtttggctcaatcctaatcaagcgctcttggagacatgcttatttcaagttcatgaacaac 14109642  T
Q  123 ttaggggatggtctttacatgaaatgcagatggtggctcaaagattaaccggtaataatactttaacttttaacctctcatatataattatatttcatat 222  Q
    |||| ||||    ||||| |||||||||||||| | ||||||| |||||||||||| |||||||||||||  || ||||||||||| ||| |||| | ||    
T  14109641 ttagtggatacaatttacgtgaaatgcagatggggactcaaaggttaaccggtaattatactttaactttagacatctcatatatacttacatttaacat 14109542  T
Q  223 c-aaacagtcactgtaataaatcattgtagtatctaaaagtatatttctttacatataatttctattaaaaaactgttcatttttagtctctatagtttc 321  Q
    | ||| |||||   ||||| |||||| |||||||||||| ||||| | ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||    
T  14109541 caaaatagtcatcataatatatcattatagtatctaaaaatatatat-tttacatataatttctattgaaatactgttcatttttagtctctacagtttc 14109443  T
Q  322 ttaaataa 329  Q
    ||||||||    
T  14109442 ttaaataa 14109435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 14024545 - 14024352
Alignment:
Q  24 agtctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcttgaagacatgcttatttcagattcatgaacaatt 123  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||  ||||||||||| |    
T  14024545 agtctgacattcggatttattataggcttttggggagtgtttggctcaatcctaatcaagcgttcctggagacatgcttatttcaagttcatgaacaact 14024446  T
Q  124 taggggatggtctttacatgaaatgcagatggtggctcaaagattaaccggtaataatactttaacttttaacctctcatatataattatattt 217  Q
    ||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||| ||||    
T  14024445 tagtggatgctatttacgtgaaatgcagatggtggctcaaagattaaccggtaataatactttaactttagacctctcatatatacttacattt 14024352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 24 - 266
Target Start/End: Complemental strand, 13931630 - 13931388
Alignment:
Q  24 agtctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcttgaagacatgcttatttcagattcatgaacaatt 123  Q
    ||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||    
T  13931630 agtctgacatttggatttattataggcttctggggcgtttttggttcaatcctaatcaagcgttcttggagacatgcttatttcaagttcatgaacaatt 13931531  T
Q  124 taggggatggtctttacatgaaatgcagatggtggctcaaagattaaccggtaataatactttaacttttaacctctcatatataattatatttcatatc 223  Q
    ||| ||||  | ||||| | ||||||||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||| ||| |||| | |||    
T  13931530 tagtggataatatttacgtcaaatgcagatgatggctcaatgattaactggtaataatactttaactgttaacctctcatatatacttacatttaacatc 13931431  T
Q  224 aaacagtcactgtaataaatcattgtagtatctaaaagtatat 266  Q
    ||  |||||    |||| |||||||||||||||||||||||||    
T  13931430 aagtagtcatcagaatacatcattgtagtatctaaaagtatat 13931388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 24 - 336
Target Start/End: Complemental strand, 14083934 - 14083622
Alignment:
Q  24 agtctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcttgaagacatgcttatttcagattcatgaacaatt 123  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||  |||||||||||||    
T  14083934 agtctgatatttggatttattataggcttctggggagtatttggctcaatcctaatcaagcgcacttggagacatgcttatttcaagttcatgaacaatt 14083835  T
Q  124 taggggatggtctttacatgaaatgcagatggtggctcaaagattaaccggtaataatactttaacttttaac-ctctcatatataattatatttcatat 222  Q
    |||  |||  | ||||| ||||||||||| ||||||| | ||  |||| |||||||||||||||||||||  | |||||||||||  ||  |||  | ||    
T  14083834 tagcagataatatttacgtgaaatgcagaaggtggcttagaggctaactggtaataatactttaactttttgcgctctcatatattcttgcattaaacat 14083735  T
Q  223 caaacagtcactgtaataaatcattgtagtatctaaaagtatatttctttacatataatttctattaaaaaactgttcatttttagtctctatagtttct 322  Q
    |||| |||||   ||||  |||||| || ||||||||| ||||||| ||||| ||| ||||||||| ||| ||||||||||||||||||||| ||||| |    
T  14083734 caaatagtcatcataatgtatcattatattatctaaaaatatattt-tttacttatcatttctattgaaatactgttcatttttagtctctacagttttt 14083636  T
Q  323 taaataatgcgttc 336  Q
    ||||||||| ||||    
T  14083635 taaataatgtgttc 14083622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 24 - 329
Target Start/End: Original strand, 13473789 - 13474091
Alignment:
Q  24 agtctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcttgaagacatgcttatttcagattcatgaacaatt 123  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||| || ||||||||||||||||  |||||||||||||    
T  13473789 agtctgacatttggatttattataggcttttggggtgtatttggatcaatcctaatcaagcgttcctggagacatgcttatttcaagttcatgaacaatt 13473888  T
Q  124 taggggatggtctttacatgaaatgcagatggtggctcaaagattaaccggtaataatactttaacttttaacctctcatatataattatatttcatatc 223  Q
    ||  ||||    ||||| | |||||||||||| |||| |||||||||| |||||||||||||||||| |  || | ||||||||| ||| |||| | ||     
T  13473889 taatggataaaatttacgtcaaatgcagatgggggcttaaagattaactggtaataatactttaactctagacatttcatatatatttacatttaacata 13473988  T
Q  224 aaacagtcactgtaataaatcattgtagtatctaaaagtatatttctttacatataatttctattaaaaaactgttcatttttagtctctatagtttctt 323  Q
    ||  ||||||  ||||| || | | | |||||||||| ||||| | |||||| ||||||||||||  |||||||||||| ||||||||||||||||||||    
T  13473989 aagtagtcaccataatatataagtatggtatctaaaaatatatat-tttacacataatttctatt--aaaactgttcatctttagtctctatagtttctt 13474085  T
Q  324 aaataa 329  Q
    ||||||    
T  13474086 aaataa 13474091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 14014411 - 14014116
Alignment:
Q  27 ctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcttgaagacatgcttatttcagattcatgaacaatttag 126  Q
    |||||||| ||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||  |||||||||||||||  |||||||||||||||     
T  14014411 ctgacatttggatttattttaggcttttggggagtatttggttcaatcctaatcaagcgttcttggcgacatgcttatttcaagttcatgaacaatttat 14014312  T
Q  127 gggatggtctttacatgaaatgcagatggtggctcaaagattaaccggtaataatactttaacttttaacctctcatatataattatatttcatatcaaa 226  Q
    |||||  | ||||| ||||||||||| ||| ||||||||| |||| ||||||||||||||||||||     ||||||||||| ||| |||| | ||||||    
T  14014311 gggataatatttacgtgaaatgcagaaggtagctcaaagactaactggtaataatactttaactttagcaatctcatatatacttacattttacatcaaa 14014212  T
Q  227 cagtcactgtaataaatcattgtagtatctaaaagtatatt-tctttacatataatttctattaaaaaactgttcatttttagtctctatagtttct 322  Q
     ||||| | |||||  ||| || ||||||||||| |||||| | ||||||||| |||| ||||  || | |||||||||| ||||| || |||||||    
T  14014211 tagtcattataatatttcactgaagtatctaaaattatattgtttttacatattatttatatttgaaga-tgttcattttaagtctttacagtttct 14014116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 24 - 326
Target Start/End: Complemental strand, 14046668 - 14046371
Alignment:
Q  24 agtctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcttgaagacatgcttatttcagattcatgaacaatt 123  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  14046668 agtctgacattcggatttattataggcttctggggtgtctttggctcaatcctaatcaagcgttcttggagacatgcttatttcaggttcatgaacaatt 14046569  T
Q  124 taggggatggtctttacatgaaatgcagatggtggctcaaagattaaccggtaataatactttaacttttaacctctcatatataattatatttcatatc 223  Q
    ||| ||||  | ||||  | ||||  |||||| | | ||| |||||||||||||||| ||||||| |||  || ||||||||||| ||| |||| | |||    
T  14046568 tagtggataatatttatgtcaaatatagatggggacgcaatgattaaccggtaataacactttaa-tttagacatctcatatatacttacatttaacatc 14046470  T
Q  224 aaacagtcactgtaataaatcattgtagtatctaaaagtatatttctttacatataatttctattaaaaaactgttcatttttagtctctatagtttctt 323  Q
    ||| |||||   ||| | |||| | ||||||   ||| ||||||| |||||||||| |||||||| |||   ||||||| ||||||||| | | ||||||    
T  14046469 aaatagtcatcataagatatcagtttagtat---aaaatatattt-tttacatatattttctattgaaatgttgttcatctttagtctccacaatttctt 14046374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 27 - 190
Target Start/End: Original strand, 13876104 - 13876267
Alignment:
Q  27 ctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcttgaagacatgcttatttcagattcatgaacaatttag 126  Q
    |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||  |||||||||||||||  ||| ||||||||||||    
T  13876104 ctgacatttggatttattataggcttttggggagtatttggttcaatcctaatcaagcgttcttggcgacatgcttatttcaagttcttgaacaatttag 13876203  T
Q  127 gggatggtctttacatgaaatgcagatggtggctcaaagattaaccggtaataatactttaact 190  Q
     ||||| | ||||| |||||||||||||||||||||||||||||  |||||||||  |||||||    
T  13876204 tggatgatatttacgtgaaatgcagatggtggctcaaagattaataggtaataattttttaact 13876267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 13893808 - 13893973
Alignment:
Q  27 ctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcttgaagacatgcttatttcagattcatgaacaatttag 126  Q
    |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||  |||||||||||||||  ||| ||||||||||||    
T  13893808 ctgacatttggatttattataggcttttggggagtatttggttcaatcctaatcaagcgttcttggcgacatgcttatttcaagttcttgaacaatttag 13893907  T
Q  127 gggatggtctttacatgaaatgcagatggtggctcaaagattaaccggtaataatactttaacttt 192  Q
     ||||  | ||||| | |||||||||||||||||||||||||||  ||||||| | ||||||||||    
T  13893908 tggataatatttacgtcaaatgcagatggtggctcaaagattaataggtaatagttctttaacttt 13893973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 14021984 - 14021815
Alignment:
Q  23 aagtctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcttgaagacatgcttatttcagattcatgaacaat 122  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||| || ||||||||||||||||  |||||||||||     
T  14021984 aagtctgacattcggatttattataggcttttggggagtgtttggctcaatcctaatatagcgttcatggagacatgcttatttcaagttcatgaacaac 14021885  T
Q  123 ttaggggatggtctttacatgaaatgcagatggtggctcaaagattaaccggtaataatactttaacttt 192  Q
    |||| ||||    ||||| |||||||||||||| ||||||||| ||||| |||||| |||||||||||||    
T  14021884 ttagtggatacaatttacgtgaaatgcagatgggggctcaaaggttaactggtaattatactttaacttt 14021815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 13863631 - 13863777
Alignment:
Q  24 agtctgacattcggatttattataggcttctggggagtatttggctcaatcctaatcaagcgttcttgaagacatgcttatttcagattcatgaacaatt 123  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||  ||| |||||||||    
T  13863631 agtctgacatttggatttattataggcttctggggtgtatttggctcaatcctaatcaagcgctcctggagacatgcttatttcaagttcttgaacaatt 13863730  T
Q  124 taggggatggtctttacatgaaatgcagatggtggctcaaagattaa 170  Q
    ||| ||||| | ||||| |||| |||||||||||||||||| |||||    
T  13863731 tagtggatgatgtttacgtgaagtgcagatggtggctcaaatattaa 13863777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 402 - 550
Target Start/End: Complemental strand, 13910741 - 13910592
Alignment:
Q  402 atgatagtgtaagctgtatatatgttctaaagtta-tttttatgatatgatatttcaagtttgaaaattttaagaaaaaattattttagactttatatct 500  Q
    ||||||||||||||| |||||| |||| ||||||| ||||| ||||||  ||||||| |||||||| || ||| ||||   |||||||||||||||||||    
T  13910741 atgatagtgtaagctttatataggttcaaaagttaatttttgtgatatagtatttcatgtttgaaagttgtaaaaaaattatattttagactttatatct 13910642  T
Q  501 aaagtggttaacacttaaactatgatacagggaatagtgtgttgatgatg 550  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13910641 aaagtggttaacacttaaactatgatacagggaatagtgtgttggtgatg 13910592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 483 - 523
Target Start/End: Complemental strand, 14024303 - 14024263
Alignment:
Q  483 attttagactttatatctaaagtggttaacacttaaactat 523  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  14024303 attttagactttatatctaaagtggttaatacttaaactat 14024263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 523
Target Start/End: Complemental strand, 14109284 - 14109243
Alignment:
Q  482 tattttagactttatatctaaagtggttaacacttaaactat 523  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  14109284 tattttagactttatatataaagaggttaacacttaaactat 14109243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 532
Target Start/End: Complemental strand, 14106524 - 14106474
Alignment:
Q  482 tattttagactttatatctaaagtggttaacacttaaactatgatacaggg 532  Q
    ||||||||||| ||||||||| |||||||||||| ||||||| ||| ||||    
T  14106524 tattttagactatatatctaaggtggttaacactcaaactattatataggg 14106474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 13910780 - 13910743
Alignment:
Q  342 ttcttatttccttgaaaataagcatatgtttttataca 379  Q
    |||| ||||||||||||||||||||||||||||| |||    
T  13910780 ttctcatttccttgaaaataagcatatgtttttacaca 13910743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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