View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2045_high_21 (Length: 319)
Name: NF2045_high_21
Description: NF2045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2045_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 28430731 - 28431031
Alignment:
| Q |
1 |
atatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggagctga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28430731 |
atatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggagctga |
28430830 |
T |
|
| Q |
101 |
ctcatttgttgttagcagtgaacaagatcaaatgcaggtatgtatctactatattagagtaattatgatcaatttttgaattctttttaggcttaattat |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28430831 |
ctcatttgtggttagcagtgaacaagatcaaatgcaggtatgtatctactatattagagtaattatgatcaatttttcaattctttttaggcttaattat |
28430930 |
T |
|
| Q |
201 |
cctattctcatagaaacggaccttcataatcgaccgaaatttgaactcaagttcaattaagatagaattaattccaatcactcgagttcggttgttacat |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28430931 |
cctattctcatagaaacggaccttgataatcgaccgaaatttgaactcaagttcaattaagatagaattaactccaatcactcgagttcggttgttacat |
28431030 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
28431031 |
g |
28431031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 13373141 - 13373003
Alignment:
| Q |
1 |
atatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggagctga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
13373141 |
atatggctgtgaaatttaccaaagcttttggtgctaatgtaacagtgataagcacttctcctaacaaaaagaaggaagccattgaacacttaggagctga |
13373042 |
T |
|
| Q |
101 |
ctcatttgttgttagcagtgaacaagatcaaatgcaggt |
139 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
13373041 |
ctcatttgtggttagccacgaacaagaccaaatgcaggt |
13373003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 13378937 - 13378823
Alignment:
| Q |
1 |
atatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggagctga |
100 |
Q |
| |
|
||||||||||||| || |||||||| ||||||| ||||||||| ||| | || |||||||||||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
13378937 |
atatggctgtgaagttcgccaaagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaagaaggaagccattgaacgcttaggagctga |
13378838 |
T |
|
| Q |
101 |
ctcatttgttgttag |
115 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
13378837 |
ctcattcgtggttag |
13378823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 13426290 - 13426150
Alignment:
| Q |
1 |
atatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggagctga |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| ||||| || || |||| |||| | |||||||| || |||| | | |||||||| |
|
|
| T |
13426290 |
atatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagctga |
13426191 |
T |
|
| Q |
101 |
ctcatttgttgttagcagtgaacaagatcaaatgcaggtat |
141 |
Q |
| |
|
||| ||| | || ||| | || | |||||| |||||||||| |
|
|
| T |
13426190 |
ctcgtttctagtaagccgcgatccagatcagatgcaggtat |
13426150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 13413054 - 13412976
Alignment:
| Q |
1 |
atatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagc |
79 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| || || || ||||| || || ||||||||| | |||||||| |
|
|
| T |
13413054 |
atatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaagaaaaggaagc |
13412976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 13385529 - 13385605
Alignment:
| Q |
3 |
atggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagc |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || || ||||| || ||| ||| |||| | |||||||| |
|
|
| T |
13385529 |
atggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaaaggaagc |
13385605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 13389350 - 13389426
Alignment:
| Q |
3 |
atggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagc |
79 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | |||||||||||||| || || || |||||| |||| ||||| |
|
|
| T |
13389350 |
atggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagc |
13389426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13446950 - 13446914
Alignment:
| Q |
1 |
atatggctgtgaaatttgccaaagcttttggtgctaa |
37 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13446950 |
atatggctgtgaaatttgctaaagcttttggtgctaa |
13446914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 13419399 - 13419297
Alignment:
| Q |
1 |
atatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggagctga |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| || || || ||||| || || ||| ||||| | |||||||| || |||| | |||||||| |
|
|
| T |
13419399 |
atatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaaaggaagcaatagaacacttgggagctga |
13419300 |
T |
|
| Q |
101 |
ctc |
103 |
Q |
| |
|
||| |
|
|
| T |
13419299 |
ctc |
13419297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 13393762 - 13393894
Alignment:
| Q |
8 |
tgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggagctgactcattt |
107 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| |||||||| ||||| || || || |||||| |||| ||||| || ||| || |||||||| |||||| |
|
|
| T |
13393762 |
tgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaagcaatagaaaacctaggagctgattcattt |
13393861 |
T |
|
| Q |
108 |
gttgttagcagtgaacaagatcaaatgcaggta |
140 |
Q |
| |
|
|| | || ||| |||||| ||||||||||| |
|
|
| T |
13393862 |
cttataagtcatgaccaagataaaatgcaggta |
13393894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University